GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002077-TA|BGIBMGA002077-PA|IPR005079|Peptidase C45,
acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    30   0.59 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   5.5  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   5.5  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   7.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   7.2  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   9.6  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 252 WTDTWGDTKLYNVEVAPDLKGDRSLVHVQK---YDQDTLVHC 290
           WT+ WGD  ++++ V   L  +RS VH  +   Y   T+ HC
Sbjct: 361 WTERWGDAPVHSLAVG--LLLNRSQVHYFRDLGYQHSTIQHC 400


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 161 PTPEDREHGAVEERFSSLCYAGHMPG-YTMGYNENGMVFSINTLS 204
           P P+   H +V E ++ L Y  H+P    +   + G+ F   TL+
Sbjct: 110 PNPQTISHESVNEEYTELPYDAHLPSEQKVPDRKWGLTFGFLTLA 154


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 42  IKSFISNYANLRDFEREYKTDTGRNAYDKTLANMEKRFPYYVKE 85
           IK +   Y  L   +R+  TD G N   KT+  ++++ P+ + E
Sbjct: 161 IKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVE 204


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 32  FDVGRTFSSIIKSFISNYANLRDFEREYKTDTG 64
           F V + F+ I+K F+ NY+N R  +R + T  G
Sbjct: 589 FRVCQMFAVILKDFVENYSN-RPVDRVFTTLIG 620


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 125 CSSVAFKNPQHTILGHTEDAFTETLNHFYIMSAHIIPTPEDREHGAVEERFSSLCYAGHM 184
           C+S+AF   +H + G  +     +L  + + S    P        +  +  SS+CY    
Sbjct: 91  CNSLAFSETEHLVAGFAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTLDGVSSVCYKKDT 150

Query: 185 P 185
           P
Sbjct: 151 P 151


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 28  YEVGFDVGRTFSSIIKSFISNYANLRDFEREYKTDTGRNAYDK---TLANMEKRFPYYVK 84
           Y + +   +T S+ + SFI N  ++++F        G N   K   +LA  ++ F Y+ +
Sbjct: 675 YTISYLAAQTNSAAVDSFILNSGSIKEFFSVLLEYLGSNVLHKKTTSLAIYKELFVYFTR 734

Query: 85  E 85
           +
Sbjct: 735 D 735


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,040
Number of Sequences: 5004
Number of extensions: 73347
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 6
length of query: 363
length of database: 2,362,478
effective HSP length: 74
effective length of query: 289
effective length of database: 1,992,182
effective search space: 575740598
effective search space used: 575740598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)