GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002077-TA|BGIBMGA002077-PA|IPR005079|Peptidase C45,
acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)                    29   4.5  
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)                    29   4.5  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               29   4.5  
SB_56825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)             29   7.8  

>SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)
          Length = 356

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 119 RNDTGGCSSVAFKNPQHTILGHTEDAFTETLNHFYIMSAHIIPTPEDREHGAVEERF 175
           R  TGGCS +A    + T   H EDA   T        A ++   E+++ G ++ ++
Sbjct: 109 RTGTGGCSMLAISEEEGTEEAHKEDATNLTF-------APVLEEDEEKDEGELDNKY 158


>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
          Length = 1067

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 119 RNDTGGCSSVAFKNPQHTILGHTEDAFTETLNHFYIMSAHIIPTPEDREHGAVEERF 175
           R  TGGCS +A    + T   H EDA   T        A ++   E+++ G ++ ++
Sbjct: 593 RTGTGGCSMLAISEEEGTEEAHKEDATNLTF-------APVLEEDEEKDEGELDNKY 642


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 114 DNHVPRNDTGGCSSVAFKNPQ---HTILGHTEDAFTETLN 150
           DNH+P+   GG S    +N +   HT +G  E   T +LN
Sbjct: 458 DNHIPQKTNGGFSGSQKRNQKPTYHTTIGGAEKVQTWSLN 497


>SB_56825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/44 (27%), Positives = 29/44 (65%)

Query: 315 AIHAHAAPKTRGDIAEILSDVTGKDFQVFSMQKDAIIKTIAAGE 358
           +++++ AP+ +G++   LSD T +  Q    ++DA I ++++G+
Sbjct: 143 SLYSYLAPQEQGNVGNALSDGTLQVIQSQKTEQDAGIDSLSSGD 186


>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
          Length = 308

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 14  RRHAVPVIYVRGSHYEVGFDVGRTFSSIIKSFISNYANLRDFEREYK---TDTGRNAY-D 69
           RR A  V+Y + S YE G ++ R    I +  + +     + E +      +  R  Y D
Sbjct: 34  RRSASKVVYEKHSSYEQGLELQRVHQGIWQRVLFDKVECEEIEEKINDVVVEADRGVYKD 93

Query: 70  KTLANMEKRFPYYVKE 85
           +T+     R  Y+  E
Sbjct: 94  RTVDRAPLRVKYFFGE 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,260
Number of Sequences: 59808
Number of extensions: 509348
Number of successful extensions: 1126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 7
length of query: 363
length of database: 16,821,457
effective HSP length: 83
effective length of query: 280
effective length of database: 11,857,393
effective search space: 3320070040
effective search space used: 3320070040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)