GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002077-TA|BGIBMGA002077-PA|IPR005079|Peptidase C45,
acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
         (363 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB199796-1|BAF43710.1|  675|Homo sapiens hypothetical protein pr...    32   2.7  

>AB199796-1|BAF43710.1|  675|Homo sapiens hypothetical protein
           protein.
          Length = 675

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 78  RFPYYVKEI--RGVADGANVPFYQLFLLQMDDLIGTINDNHVPRNDTGGCSSV---AFKN 132
           R+P  +++I    V D +  P  Q  +  + D+   IN+  + +      + V     + 
Sbjct: 174 RYPLLLQKILENTVPDASAYPVLQRAVSALQDVNTNINEYKMRKEVASKYTKVEQLTLRE 233

Query: 133 PQHTILGHTEDAFTETLNHFYIMSAHIIPTPEDREHGAVEERFS--SLC 179
               I  HT    T  L+      A +IP  ED+E   +EERF   SLC
Sbjct: 234 RLARINTHTLSKKTTRLSQLLKQEAGLIPRTEDKEFDDLEERFQWVSLC 282


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,285,243
Number of Sequences: 224733
Number of extensions: 2128462
Number of successful extensions: 5912
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5912
Number of HSP's gapped (non-prelim): 1
length of query: 363
length of database: 73,234,838
effective HSP length: 91
effective length of query: 272
effective length of database: 52,784,135
effective search space: 14357284720
effective search space used: 14357284720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)