GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002077-TA|BGIBMGA002077-PA|IPR005079|Peptidase C45,
acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
         (363 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    33   0.42 
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    33   0.42 
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    29   3.9  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   5.2  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   5.2  
AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical pr...    29   6.8  
AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical...    28   9.0  

>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 36  RTFSSIIKSFISNYANLRDFEREYKTDTGRNAYDKTL---ANMEKRFPYYVKEIRGVADG 92
           +T S I+K F+ NY +L +  R    D  R+ + K      N ++     +KE + V D 
Sbjct: 102 KTASPILKDFVKNYEHLENVRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVKDW 161

Query: 93  ANVPFYQLFLLQMD 106
            N  F +   L  D
Sbjct: 162 INNSFREFSELPDD 175


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 36  RTFSSIIKSFISNYANLRDFEREYKTDTGRNAYDKTL---ANMEKRFPYYVKEIRGVADG 92
           +T S I+K F+ NY +L +  R    D  R+ + K      N ++     +KE + V D 
Sbjct: 94  KTASPILKDFVKNYEHLENVRRVIHRDNSRSVFAKEAPRPVNYKEATKVLLKEFKLVKDW 153

Query: 93  ANVPFYQLFLLQMD 106
            N  F +   L  D
Sbjct: 154 INNSFREFSELPDD 167


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 161 PTPEDREHGAVEERFSSLCYAGHMPGYTMGYNENGMVFSIN 201
           P PE RE   V++R  +  YAG  PG     N + ++  IN
Sbjct: 248 PAPEGREFNIVDDRTINEKYAGLNPGVEFISNVDRLISDIN 288


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 243  GNGFSVNMIWTDTWGDTKLYNVEVAPDLKGDRSLVHVQKYDQDTLVHC 290
            G G  V+ I+TD   +  ++ + +A + KG+     V K + D  + C
Sbjct: 1228 GFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRC 1275


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 243  GNGFSVNMIWTDTWGDTKLYNVEVAPDLKGDRSLVHVQKYDQDTLVHC 290
            G G  V+ I+TD   +  ++ + +A + KG+     V K + D  + C
Sbjct: 1235 GFGNDVHTIYTDDNAEKLVFRLRIAGEDKGEAQEEQVDKMEDDVFLRC 1282


>AC024787-1|AAF60607.2|  469|Caenorhabditis elegans Hypothetical
           protein Y46C8AR.1 protein.
          Length = 469

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 153 YIMSAHIIPTPEDREHGAVEERFSSLCYAGHMPGYTMGYNENGMVFSINTLSPLLLKPGN 212
           Y +S   +  PED ++ +    FSS   + H+P YT+G+ E       N    +     N
Sbjct: 212 YAVSRFDLRQPEDIQYFSDYSLFSSYV-SSHLPDYTLGFEE--ATTGSNVFEVINKFYDN 268

Query: 213 TPRTFITRKLLSAKSFPD 230
           T  T  +  ++ +K +P+
Sbjct: 269 TQATCGSNLIILSKRYPN 286


>Z50070-8|CAA90397.1|  263|Caenorhabditis elegans Hypothetical
           protein F43G6.8 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 50  ANLRDFEREYKTDTGRNAYDKTLANMEKRFPYYVKEIRGVAD 91
           AN RD E   K    R+ Y KT+    KR  +Y K++  +A+
Sbjct: 139 ANYRDLEDRIKEVRHRDRYMKTVETERKRTTFYRKKMLELAE 180


>AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical
           protein T15B7.14 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 44  SFISNYANLRDFEREYKTDTGRNAYDKTLANMEKRFPYYVKEIRGVADGANV 95
           S+I +Y N+ D +R  + +   N Y +T+  +  R   Y++EI    D   V
Sbjct: 156 SWIQHYVNVYD-DRSKRMEKFMNEYTRTVDLVSSRLACYIEEIDSELDEVEV 206


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,135,339
Number of Sequences: 27539
Number of extensions: 388533
Number of successful extensions: 708
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 12,573,161
effective HSP length: 82
effective length of query: 281
effective length of database: 10,314,963
effective search space: 2898504603
effective search space used: 2898504603
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)