GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002076-TA|BGIBMGA002076-PA|IPR001214|SET, IPR002893|Zinc
finger, MYND-type
         (743 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   3.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   3.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   5.7  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
          protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 4  IYEEVDPIYAATCSDITLCSNSKGFFKGLADDLVSLAGEEW 44
          IY   +  + A   D TLC++    F GL DD V    ++W
Sbjct: 32 IYRPDNGKFTALDVDPTLCTHLLYAFVGLRDDGVVSVLDDW 72


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 621 NDSISYIRCSNLACRGKLRGSVQRMGDRCS-LCSTPIDKDLVTVKIDTINKC 671
           N   S   C +  C+    G V R+ D    +C  P   +    +IDTIN+C
Sbjct: 372 NCEFSGYDCDSNPCQN---GGVCRISDGGGYICDCPSGTNGTNCEIDTINEC 420


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 483 FKNCNKNNLTKAQQSICELIVRNLQLLQFNAHEIYETVRGEHQFSGSKPLYFAVGIYPVG 542
           F + N N        + +LI+R+   L+    +I+       Q +   P + A+G++P+ 
Sbjct: 587 FAHLNSNEARATLNWVSKLIIRSNPSLEEKL-QIFAL-----QLTHRAPTFTALGLFPIN 640

Query: 543 ALFNHECYPAVTRY 556
             F      A T Y
Sbjct: 641 GSFAFTVVGAATTY 654


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,945
Number of Sequences: 317
Number of extensions: 6806
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 743
length of database: 114,650
effective HSP length: 62
effective length of query: 681
effective length of database: 94,996
effective search space: 64692276
effective search space used: 64692276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)