Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002076-TA|BGIBMGA002076-PA|IPR001214|SET, IPR002893|Zinc
finger, MYND-type
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559... 73 1e-12
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 44 4e-04
03_01_0482 - 3686954-3688564 43 0.001
08_01_0695 + 6148873-6150051 41 0.004
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 37 0.051
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 34 0.36
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 34 0.47
04_04_1245 - 32036929-32037042,32037152-32037208,32037299-320373... 33 0.63
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 33 1.1
10_07_0166 - 13746208-13746326,13746461-13746532,13746925-137471... 32 1.9
10_08_0582 + 18943198-18944610 31 3.3
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977... 31 3.3
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 31 4.4
05_07_0263 + 28775769-28777109 31 4.4
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 30 5.8
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 30 5.8
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 5.8
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 7.7
>10_08_0571 -
18855317-18855541,18855667-18855747,18855849-18855963,
18856061-18856224,18856307-18856540,18856626-18856781,
18857113-18857244,18857850-18857984,18858071-18858457,
18858708-18858826,18858914-18859124,18859268-18859339,
18859542-18859628,18859993-18860127,18860240-18860368
Length = 793
Score = 72.5 bits (170), Expect = 1e-12
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Query: 488 KNNLTKAQQSICELIVRNLQLLQFNAHE-IYETVRGEHQFSGS-----KPLYFAVGIYPV 541
+++L++ IC++ V ++ ++ + + + +G FSG + + A IY
Sbjct: 420 EDSLSQLVLLICQIKVNSIAIVHMKSMDGVKALTKGFSGFSGDVMCSVEQVRVAQAIYMS 479
Query: 542 GALFNHECYPAVTRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQRALACRYW 601
G+ FNH C P + YF R ++LR+T + G + +YGP L ERQ++L Y+
Sbjct: 480 GSFFNHSCRPNIHAYFHSRTLILRSTEYIKAGSPIELSYGPQVGEMDLPERQKSLRENYY 539
Query: 602 FHCECTAC 609
F C C++C
Sbjct: 540 FSCGCSSC 547
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 258 NKGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCSG 317
NKGR + + ++ + P A ++ THC +CF + V CP C+
Sbjct: 226 NKGRGMSSPNDISPASLIHAEDPLAVIIMKSCRDTHCHYCFSE----APADVVVCPSCTI 281
Query: 318 VVFCSIECRDTAV 330
++CS C++ A+
Sbjct: 282 PIYCSNRCQEKAI 294
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 44.0 bits (99), Expect = 4e-04
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 497 SICELIVRNLQL-LQFNAHEIYETVRGEHQFSGSKPLYFAVGIYPVGALFNHECYPAVTR 555
++ +LI+ + +L L+ H + H + G+YPV ++ NH C P
Sbjct: 134 NLVQLILPSFELDLKEITHTFSKFACNAHTICDPELRPLGTGLYPVLSIINHSCVPNAVL 193
Query: 556 YFEGRKIVLRATRPLTPGEVVSE 578
FEGR +RA +P++ E SE
Sbjct: 194 IFEGRTAYVRALQPISKNEEDSE 216
Score = 30.3 bits (65), Expect = 5.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 259 KGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCF--RRLADCEESAPVW 311
KGR A+ G+V++ PYA+ G++C +CF R L C W
Sbjct: 25 KGRGLFAARSFFPGEVVISQEPYASTPNKISVGSNCDNCFASRNLRKCSVCRVAW 79
>03_01_0482 - 3686954-3688564
Length = 536
Score = 42.7 bits (96), Expect = 0.001
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 536 VGIYPVGALFNHECYPAVTRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQRA 595
VG++ + A NH C+P R G ++ A+R + GE ++ Y F + T ++R
Sbjct: 312 VGLWILPAFINHSCHPNARRTHVGDHAIVHASRDIKAGEEITFAY---FDVLTPASKRRE 368
Query: 596 LACRYWFHCECTACK 610
A + C+C C+
Sbjct: 369 AARAWGLECQCDRCR 383
>08_01_0695 + 6148873-6150051
Length = 392
Score = 40.7 bits (91), Expect = 0.004
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 259 KGRFAVASAPVRTGDVLLVDSP---YAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKC 315
+GR +A+ +R G+V+L + P Y A L S + C CFR L+ +A CP C
Sbjct: 14 RGRGLLAARSIREGEVILTEQPLLLYPASLAS--LPSFCSACFRSLS----AAASPCPSC 67
Query: 316 SGVVFCSIECRDTAVSSYHSFECQFLDLFVGSG 348
FCS C A +S+ C L G+G
Sbjct: 68 RAAGFCSPSC---AAASHPRLLCTALSGGGGNG 97
Score = 39.9 bits (89), Expect = 0.007
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 535 AVGIYPVGALFNHECYPAVTRY-FEGR------KIVLRATRPLTPGEVVSENYGPHFMMR 587
A +YP +L NH+C P + + R IV+RA +T G V +Y
Sbjct: 199 AYAVYPRASLLNHDCLPNACHFDYADRPGPGNTDIVVRALHDITEGREVCLSY--FAANW 256
Query: 588 TLRERQRALACRYWFHCECTACK 610
++RQ+ L Y F CEC C+
Sbjct: 257 QYKDRQQRLLEDYGFRCECERCQ 279
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 37.1 bits (82), Expect = 0.051
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 273 DVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCSGVVFCSIEC--RDTAV 330
D+ +PYA L +HC CF R+ + + C C V +C +C D V
Sbjct: 16 DLTQAIAPYATALHDASLQSHCSSCFHRI-PAQSPHDMSCTMCGSVRYCCSDCLISDCEV 74
Query: 331 SSYHSFECQFLDLFVGSGMSILS------HIALRMVTQSDLETCLTIHSKYISNDIKTVE 384
S C F+ + S L+ ALR++ + ++ S SN I +
Sbjct: 75 HSSSGECCFFVKHLREASPSTLTEETSDIRAALRLLYSLETRGLVSSDSVSSSNRIGGLS 134
Query: 385 GSVLNDI--------EGVAKKS--KMKSRKERL-NRNKKSHKMSVEKNDRVDVMEDKLED 433
S + ++ EGV + S + +RK R+ N S+ +++EK VM + +E
Sbjct: 135 ASGIREVLEEGGEIAEGVLEGSLLMLSARKSRMKNYVGLSNGLTIEKVALWAVMTNSVEV 194
Query: 434 KNNFEEKL 441
+ + E+ L
Sbjct: 195 QISEEQSL 202
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 34.3 bits (75), Expect = 0.36
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 408 NRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAA 446
NR K+ + EKN RV ME L DKN+ ++E +AA
Sbjct: 107 NREKELEAVLAEKNSRVSQMEATLTDKNSHIRQMEERAA 145
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 33.9 bits (74), Expect = 0.47
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 371 IHSKYISNDIKTVEGSVLNDIEGVAK-KSKMKSRKERLNRNKK-SHKMSVEKN---DRVD 425
+ + D G+V N IE +AK + ++KS K+ L+ +K+ S K+++E N +V
Sbjct: 692 VSGNHFERDTLPTVGTVNNSIEMLAKLEEELKSCKKELDASKELSKKLTMENNLLDQKVQ 751
Query: 426 VME-DKLEDKNNFEEKLELKAAQVYS 450
+E K E+K+N E E + ++ S
Sbjct: 752 RLERAKSEEKSNMERVYEDECCKLKS 777
>04_04_1245 -
32036929-32037042,32037152-32037208,32037299-32037375,
32037479-32037563,32037615-32037684,32038007-32038068,
32038249-32038336,32038685-32038815,32039182-32039213,
32039377-32039489,32039741-32040045,32040148-32040233,
32040350-32040425,32041002-32041097
Length = 463
Score = 33.5 bits (73), Expect = 0.63
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 539 YPVGALFNHECYPAVTRY-----FEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQ 593
+P+ + NH C P Y +G +++ A P+ + ++ +Y + + ERQ
Sbjct: 386 FPLQSCMNHSCCPNAKAYKRDEDTDGNAVII-ALEPIKKDDEITISYIDEDV--SYEERQ 442
Query: 594 RALACRYWFHCECTACKEDWP 614
LA Y F C C C+E+ P
Sbjct: 443 AELA-DYGFICTCPRCQEEKP 462
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 32.7 bits (71), Expect = 1.1
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 380 IKTVEGSVLNDIEGVAKKS----KMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKN 435
I+ E + L +IE AK+S + + RK++ + K S K + KN++VD+ E +E +
Sbjct: 445 IREEEAAGLAEIELKAKRSAAEKEKRIRKKQAKQKKNSRKNNKGKNEKVDIKEIVIESSS 504
Query: 436 NFEEK-LELKAAQVYSLCTHSD 456
+++ L+ ++Q + +++D
Sbjct: 505 PPDDRILDDLSSQAEEITSNAD 526
>10_07_0166 -
13746208-13746326,13746461-13746532,13746925-13747104,
13747737-13747785
Length = 139
Score = 31.9 bits (69), Expect = 1.9
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 535 AVG--IYPVGALFNHECYPAV-TRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRE 591
AVG +Y + + +NH+C P + L+A R + GE + Y M +
Sbjct: 60 AVGNAVYMLPSFYNHDCDPNTHIVWLASADARLKALRNIEEGEELRICYIDASM--DVDA 117
Query: 592 RQRALACRYWFHCECTAC 609
RQR LA + F C C C
Sbjct: 118 RQRILAEGFGFECRCQRC 135
>10_08_0582 + 18943198-18944610
Length = 470
Score = 31.1 bits (67), Expect = 3.3
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 62 ENKEVMEALTEVLSRIQPLHRGKDARISSQRRGDAQSALKNEDLMKALALASQAVLRAPV 121
EN+ ++ + V++R+Q GKDA +S RR A+ A N L L +A+ P
Sbjct: 150 ENQALLRSFDAVVNRLQAALDGKDAAAASLRRDHAELADGNARLGARL---DRALAPPPG 206
Query: 122 TGENEAIDGGVS 133
G ++A+ +S
Sbjct: 207 AGGDDALGAMLS 218
>08_01_1083 +
11096520-11096664,11097543-11097592,11097682-11097754,
11099122-11099201,11099354-11099505,11100653-11100812,
11100886-11100933,11101118-11101198,11101517-11101597
Length = 289
Score = 31.1 bits (67), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 663 VKIDTINKCTAQYQEGAKLMDKEMPEEATATLCSAIDSFHEAGR 706
+K D+ ++ + Y E A K P+EA L A+D F E GR
Sbjct: 64 LKGDSKHEAASAYVEAANCYKKFSPQEAAQALNQAVDLFLEIGR 107
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 30.7 bits (66), Expect = 4.4
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 404 KERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGDDY 463
KE L +++ + VEK+ V +M++KLED ++ A + + RG +
Sbjct: 297 KEELTDKERNARSLVEKSREVTMMKEKLED--------DIAQAVALKIELEREHVRGTNV 348
Query: 464 LKRIVMGYFLTECLKHAGFFK----NCNKNNLTKAQQSICELIVRNLQLLQFNAHEIYET 519
LK M + + K F+ ++ +KA+ CE I + + L N + E
Sbjct: 349 LKN--MNNRVKQLQKQIHDFREQYIQYTQDESSKAENDKCE-IQKEINSLHSNVTRLKEE 405
Query: 520 VRGEHQ 525
RG H+
Sbjct: 406 ERGLHE 411
>05_07_0263 + 28775769-28777109
Length = 446
Score = 30.7 bits (66), Expect = 4.4
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 65 EVMEALTEVLSRIQPLHRGKDARISSQRRGDAQ--------SALKNEDLMKALALASQAV 116
EV +L + + PL G +A+ + RGDA+ A +++D+MK++ +A+
Sbjct: 280 EVTTSLEAEAAALAPLLNGAEAKAALGARGDAEWKMCSAAVGAAQHKDVMKSVKPEVEAL 339
Query: 117 LRAPVTGENEAIDGGV 132
LR T + GG+
Sbjct: 340 LRRGTTPTRVLLYGGI 355
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 30.3 bits (65), Expect = 5.8
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 516 IYETVRGEHQFSGSKPLYFAVGIYPVGALFNHECYPAVTRYFEGRKIVLRATRPLTPGEV 575
+ E + +HQ KP + +G+ VG +FN E A+ R + + P T E
Sbjct: 412 LVEVLYTDHQVRKVKP-HVLLGLSGVGGIFNEEVLKAMKESDSPRPAIFAMSNPTTKAEC 470
Query: 576 VSEN 579
E+
Sbjct: 471 TPED 474
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 30.3 bits (65), Expect = 5.8
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 668 INKCTAQYQEGAKLMDKEMPEEATATLCSAIDSFHEAGRPPHLETHLAQEALRSCFAVRG 727
+ A A +D E+ ATAT C +S+ + ++ R CF R
Sbjct: 203 LGSAEADTSAAAARVDSEIAAAATATTCHGPNSWWKGTEKGKMKVRRKMREPRFCFQTRS 262
Query: 728 NIHILKKDGEK 738
++ +L DG K
Sbjct: 263 DVDVL-DDGYK 272
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 30.3 bits (65), Expect = 5.8
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 349 MSILSHIALRMVTQSDLETCLTIHSKYISNDIKTVEGSVLNDI-EGVAKKSKMKSRKERL 407
M + + ++L++VT + + +S ND E LND E K K+ K+
Sbjct: 1448 MEVGNTMSLQVVTMKEKTNFMLENSSVQENDNTGFE--TLNDKREEQVKNIKLNPLKDEN 1505
Query: 408 NRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLEL 443
N N H +E N + V ++KL +LE+
Sbjct: 1506 NHNTFEHTYIIEGNVELHVKDEKLVTLETEGSELEV 1541
>04_03_0153 + 11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 7.7
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 295 LHCFRRLADCEESAPVWCPKCSGVVFCSIECRDTAVSSYHSFECQFLDLFVGSGMSILSH 354
+ FR L C+E P+ + +G + CSI + + EC LF+G +LS
Sbjct: 1053 IRTFRSLMRCDEKNPL---ELAGGLTCSI--------MHTTVECLLQSLFLGGYRFLLSF 1101
Query: 355 IALRMVTQSDLETCLTIHSKYISNDIKT 382
L + Q TC+ + ++ D KT
Sbjct: 1102 DLLSPMPQFSEWTCIDTSTTWLIGDGKT 1129
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,147
Number of Sequences: 37544
Number of extensions: 842578
Number of successful extensions: 2232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2212
Number of HSP's gapped (non-prelim): 30
length of query: 743
length of database: 14,793,348
effective HSP length: 87
effective length of query: 656
effective length of database: 11,527,020
effective search space: 7561725120
effective search space used: 7561725120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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