Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002076-TA|BGIBMGA002076-PA|IPR001214|SET, IPR002893|Zinc
finger, MYND-type
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 132 7e-31
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 73 8e-13
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 67 6e-11
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 49 1e-05
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 41 0.004
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 41 0.004
SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032) 35 0.27
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 34 0.48
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 34 0.48
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34) 33 0.83
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83
SB_26568| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.83
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 33 1.1
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.1
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 1.1
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 32 1.5
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 32 1.9
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 32 1.9
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 32 1.9
SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 2.5
SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 31 2.5
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 31 2.5
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 31 2.5
SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10) 31 2.5
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 31 2.5
SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3) 31 3.4
SB_15201| Best HMM Match : Tropomyosin (HMM E-Value=0.24) 31 3.4
SB_39156| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.4
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.5
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.5
SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08) 31 4.5
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 31 4.5
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30) 31 4.5
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 30 5.9
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 30 5.9
SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_41353| Best HMM Match : HLH (HMM E-Value=1.2) 30 5.9
SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.9
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 30 5.9
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.8
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.8
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 30 7.8
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 132 bits (320), Expect = 7e-31
Identities = 110/428 (25%), Positives = 185/428 (43%), Gaps = 52/428 (12%)
Query: 224 QSKRPPDKNATT----LTGGAXXXXXXXXXXXXIVEEENKGRFAVASAPVRTGDVLLVDS 279
Q++ +KN ++ L+GG I ++N+GRF AS+ +R GD L+ +
Sbjct: 257 QARHSQNKNGSSGSACLSGGRHPKMANGSSLLKINYDQNQGRFLQASSEIRAGDTLIAEE 316
Query: 280 PYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCSGVVFCSIECRDTAVSSYHSFECQ 339
PY+A LL + THC C++ L APV C CS V++CS CR+ A S YH EC+
Sbjct: 317 PYSAVLLPENAKTHCECCYKSLV-----APVPCNHCSSVLYCSAACRNKAWSQYHHVECE 371
Query: 340 FLDLFVGSGMSILSHIALRMVTQSDLETCLTIHSKYISNDIK---------TVEGSVLND 390
+ + +H++LR++ + + + + + +S D+ TV GS D
Sbjct: 372 IFPVL--EIVDTFTHLSLRILLTTSAKDIIDVLNG-LSRDVATTSCSLPGCTVSGSYPGD 428
Query: 391 ---IEGVAKKSKMKSRKERLN-RNKKSHKMSVEKNDR-------VDVMEDKLEDKNNFEE 439
+ + S ++ K ++ + + +N + DK + + +
Sbjct: 429 YGSVFSLVTNSDLQPIKALMSFAMNSAFLVEFLENGTSSACIHCSQIKSDKTKVQTELDS 488
Query: 440 KLELKAAQVYSLCTHSDRRRGDDYLKRIVMGY---FLTECLKHAGFFKN--CNKNNLTKA 494
+ ++VY+ C + G+ R + + + G C K+ L +
Sbjct: 489 DDDSDCSEVYNACEEQRTQNGNFEQDRTICSRNTPYSRQAYTSLGITTEEFCGKDGL--S 546
Query: 495 QQSICELIVRNLQLLQFNAHEIY------------ETVRGEH-QFSGSKPLYFAVGIYPV 541
+ L+V +LQ + N H I E + G H Q + A IYP
Sbjct: 547 SDVVGALLVHHLQQMPCNVHAITAIVSTSSSDEEDEEMGGSHDQVVSREQRRIASAIYPT 606
Query: 542 GALFNHECYPAVTRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQRALACRYW 601
+L NH C P V F +V RAT + PG ++ YGPH ERQ+ L +Y+
Sbjct: 607 ASLLNHACDPDVLVSFVDGVLVARATHNIAPGSGITHCYGPHVNHMPREERQKLLYKQYF 666
Query: 602 FHCECTAC 609
F C+C+AC
Sbjct: 667 FTCQCSAC 674
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 72.9 bits (171), Expect = 8e-13
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 257 ENKGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCS 316
E KGR +A+ + GDVLLV+ P+A+ LL + +HC CF + AP+ C C+
Sbjct: 40 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHIL-----APLPCSYCT 94
Query: 317 GVVFCSIECRDTAVSSYHSFECQFLDLFVGSGMSILSHIALRMVTQSDLE 366
V +CS +C + +YH EC L+ +G H+ALR+V ++ +
Sbjct: 95 TVRYCSEKCAKESWDAYHYAECMNLEHVYVAGK--YGHLALRVVVKAGFQ 142
Score = 69.7 bits (163), Expect = 8e-12
Identities = 40/116 (34%), Positives = 57/116 (49%)
Query: 448 VYSLCTHSDRRRGDDYLKRIVMGYFLTECLKHAGFFKNCNKNNLTKAQQSICELIVRNLQ 507
+Y L H+ R +D R + +L CL+ ++ + K + Q I L++R+LQ
Sbjct: 179 IYHLVGHTHERTLNDLFVRTLNAIYLLRCLEGTEYYGDSTKLPSREDQAFIGGLLLRHLQ 238
Query: 508 LLQFNAHEIYETVRGEHQFSGSKPLYFAVGIYPVGALFNHECYPAVTRYFEGRKIV 563
L NAHEI E + S+ GIY +LFNH C P VTR+F G K V
Sbjct: 239 SLPCNAHEISELQLSLKSVATSEAAEIGAGIYGTLSLFNHSCEPNVTRFFYGDKCV 294
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 66.9 bits (156), Expect = 6e-11
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 257 ENKGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWCPKCS 316
E KGR +A+ + GDVLLV+ P+A+ LL + +HC CF + AP+ C C+
Sbjct: 244 EEKGRHTIAARDINIGDVLLVEKPFASVLLQEQSKSHCHQCFVHIL-----APLPCSYCT 298
Query: 317 GVVFCSIECRDTAVSSYHSFECQFLDLFVGSGM 349
V +CS +C + +YH EC L+ +G+
Sbjct: 299 TVRYCSEKCAKESWDAYHYAECTNLEHVYVAGL 331
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 49.2 bits (112), Expect = 1e-05
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 253 IVEEENKGRFAVASAPVRTGDVLLVDSPYAACLLSDYYGTHCLHCFRRLADCEESAPVWC 312
+ E E+KGR A+ P+++GD +L + P L + G C C +L+D + C
Sbjct: 10 VFETESKGRGLRAAKPLKSGDTILSEQPVVYMLSNMLRGQRCDFCLEKLSDLQR-----C 64
Query: 313 PKCSGVVFCSIECRDTAVSSYHSFECQFLD-LF--VGSGMSILSHIALRMVTQSDLETCL 369
+C +C C+ A H EC+ L +F V + + +L ++ +Q+ L
Sbjct: 65 SRCKFARYCGASCQ-RAAWRIHKSECERLKRVFPRVPTDLVLLMFRVWQLKSQNGWYDSL 123
Query: 370 TIHSKYISNDIKTVEGSVL 388
+ + I +D K SVL
Sbjct: 124 VSNVEKIDSDAKEDFVSVL 142
Score = 48.8 bits (111), Expect = 2e-05
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 537 GIYPVGALFNHECYPAVTRYFEGRKIVLRATRPLTPGEVVSENYGPHFMMRTLRERQRAL 596
GI+P NH C P F G I ++A + GE ++ +Y R RQ L
Sbjct: 183 GIFPNAVCLNHSCAPNSVAVFNGTNIYIKALEEIPVGEELTISYIQQLHPR--ETRQEEL 240
Query: 597 ACRYWFHCECTACKEDWPTMKQMNNDSISYIRCSNLAC 634
++ F+C+C C + NN ++ + C N +C
Sbjct: 241 QTQFCFYCQCHRCLD-----ASDNNKMLTSLICPNKSC 273
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 40.7 bits (91), Expect = 0.004
Identities = 25/96 (26%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 374 KYISNDIKTVEGSVLNDIEGVAKKSKMKSR--KERLNRNKKSHKMSVEKNDRVDVMEDK- 430
K + +++T++ + ND + ++SK SR +E NR++ + ++EK ++D M K
Sbjct: 183 KALEQEVQTLKKIIANDRDKKEEESKDFSRHFREMQNRSEGYRRENIEKQAQIDQMRSKN 242
Query: 431 --LEDKN-NFEEKLELKAAQVYSLCTHSDRRRGDDY 463
LE +N N +++LE K + ++ +D+ + ++Y
Sbjct: 243 NMLETENANLKKRLEDKDQDLRNITAENDKNKVENY 278
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 40.7 bits (91), Expect = 0.004
Identities = 25/96 (26%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 374 KYISNDIKTVEGSVLNDIEGVAKKSKMKSR--KERLNRNKKSHKMSVEKNDRVDVMEDK- 430
K + +++T++ + ND + ++SK SR +E NR++ + ++EK ++D M K
Sbjct: 2711 KALEQEVQTLKKIIANDRDKKEEESKDFSRHFREMQNRSEGYRRENIEKQAQIDQMRSKN 2770
Query: 431 --LEDKN-NFEEKLELKAAQVYSLCTHSDRRRGDDY 463
LE +N N +++LE K + ++ +D+ + ++Y
Sbjct: 2771 NMLETENANLKKRLEDKDQDLRNITAENDKNKVENY 2806
>SB_58902| Best HMM Match : TNFR_c6 (HMM E-Value=0.032)
Length = 397
Score = 34.7 bits (76), Expect = 0.27
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 391 IEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYS 450
++ +K K +K+ N K+SHK ++ + + +++DKL+ K EK LK +
Sbjct: 187 LQFASKIKKTHEKKKEKNVAKESHKQTLTEEEHGSIIQDKLQRKEIKYEK--LKEGKSRG 244
Query: 451 LCTHSDRRR 459
T DRRR
Sbjct: 245 EVTGVDRRR 253
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 33.9 bits (74), Expect = 0.48
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 620 NNDSISYIRCSNLACRGKLRGSVQRMGDRCSLCSTPIDKDLVTVKID 666
NN + C +L C L ++ GD C C +PI KD+ TV +D
Sbjct: 191 NNKDVRIEPCGHLMCHLCLEQWQEKGGDGCPFCRSPI-KDIQTVVVD 236
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 33.9 bits (74), Expect = 0.48
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 365 LETCLTIHSKYISNDIK--TVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKND 422
L T T+ + IK + +G+++ND +K++ + LNRNK + VEKND
Sbjct: 316 LSTLKTLKNPKAVKPIKGQSKKGTIINDNSRRSKRASISRESAELNRNKDT--SPVEKND 373
Query: 423 RVDVMEDKLEDKNNFEEKLELKAAQVYS 450
ED E + F +K + K V S
Sbjct: 374 N----EDSCEGEKPFAKKSKGKKKTVIS 397
>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1074
Score = 33.1 bits (72), Expect = 0.83
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 360 VTQSDLETCLTIHSKYISNDIKTVEGSVLNDIEG-VAKKSKMKSRKERLNRNKKSHKMSV 418
V QS T+ S + D+++ + S++++++ ++ + + R RL + HK +
Sbjct: 684 VAQSPNNIISTVQS--LLGDVQSTDTSIMSELQSYLSDEDIVHLRDSRLTKPTPEHKDQI 741
Query: 419 EKN---DRVDVMEDKLEDK-NNFEEKLELKAAQVYSLCTHSDRRRGDDYLKRIVMG 470
+ +R + LE + + E+KL+ +A + HS + RG +RI G
Sbjct: 742 HSSRNSERQSKKRNNLEKRLHELEKKLQTRAKSITPTRKHSRKDRGQITPERIGQG 797
>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 33.1 bits (72), Expect = 0.83
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLE 442
KK K K +K++ + KK K E+ + + E++ E+K EE+ E
Sbjct: 169 KKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEEEEE 215
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLE 442
KK K K +K++ + KK K +K + + E++ E+K EE+ E
Sbjct: 166 KKKKKKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEE 212
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLE 442
KK K K +K++ + KK K E+ + + E+K E + EE+ E
Sbjct: 170 KKKKKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEEEEEE 216
Score = 31.5 bits (68), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLE 442
KK K K +K++ + KK + E+ + + E+K E++ EE+ E
Sbjct: 173 KKKKKKKKKKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEEEEEEEEE 219
>SB_26568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 33.1 bits (72), Expect = 0.83
Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 386 SVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKA 445
+VLN++ G+A SK+K+ +E L + + + + +K ++++ +E++N L
Sbjct: 166 NVLNEMAGLAVLSKVKATEECLEQKQNAIRACTDK----ELLQSLVEERNTSRTDL---L 218
Query: 446 AQVYSLCTHSDRRRGDDYLKRI 467
A + LCT+ R ++++ +
Sbjct: 219 ADIEELCTNLSTERLEEWMTNL 240
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELK 444
KKSK KS+ + N+ +KS E ++ + ++K E+ N EE+ + K
Sbjct: 435 KKSKKKSKDKSKNKGEKSKNKEEESKNKEEKSKNKEEESKNKEEESKNK 483
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 401 KSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLEL 443
K KE +++ K +K EK D+ D E +DK N E+K E+
Sbjct: 9 KEDKEEMDKQDKENKEDKEKMDKEDKEEMDKQDKENKEDKEEM 51
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 620 NNDSISYIRCSNLACRGKLRGSVQRMGDRCSLCSTPIDKDLVTVKID 666
NN + C +L C L ++ GD C C +P+ KD+ TV +D
Sbjct: 387 NNKDVRIEPCGHLMCHLCLEQWQEKGGDGCPFCRSPM-KDIQTVVVD 432
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 32.3 bits (70), Expect = 1.5
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 378 NDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDR----VDVMEDKLED 433
NDIK + S L++ EG K ++ + ER + + SH + ++ND+ V V++
Sbjct: 2451 NDIK--QASDLSENEGNRLKEELNAFTERYDELRASHMSTKKENDKLRQEVSVLKQNFGQ 2508
Query: 434 KNNFEEKLELKAAQV 448
N +E LE++ +V
Sbjct: 2509 LQNDKEDLEIERDRV 2523
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 31.9 bits (69), Expect = 1.9
Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 337 ECQFLDLFVGSGMSILS--HIALRMVTQSDLE-TCLTIHSKYISNDIKTVE--GSVLNDI 391
E Q +D F+ SGM LS + + +++L+ T LT I + E +L ++
Sbjct: 951 EVQTIDTFLTSGMEALSTRPQTVEEIGEANLKHTELTSQKPQIQPLFEKAESKNKLLRNV 1010
Query: 392 E--GVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDK-NNFEEKLELKAAQV 448
GV + ++++R ++ +SH++ V+ ++V+VM+ +E + F+++L+ AA+
Sbjct: 1011 AGGGVEQIGQLQARWDKFELMLESHELMVK--EQVEVMKSNVESRVQAFQQELDKFAARW 1068
Query: 449 YSL 451
+ L
Sbjct: 1069 HQL 1071
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 31.9 bits (69), Expect = 1.9
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 398 SKMKSRKERLNRNKKSHKMS-VEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSD 456
SK K E NR +K + +E+ +RV+ M+ K ++K EE+ + + +
Sbjct: 278 SKYKDILEARNRQRKREREEELERIERVEEMQRKTQEKKRIEEEEQKRKEAEEKKAKEIE 337
Query: 457 RRRGDDYLKR 466
+RR ++ +K+
Sbjct: 338 QRRMEEEIKK 347
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 31.9 bits (69), Expect = 1.9
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 365 LETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRV 424
L C+ H Y+ + + + ++ A++ K++ KER K++ + +NDR
Sbjct: 258 LALCMGNHELYMRR--RKPDTIEVQQMKAQAREEKVRREKERNALVKEAEARTKAENDR- 314
Query: 425 DVMEDKLEDKNNFEEKLELKAAQ 447
++E+KL K + EK E++AAQ
Sbjct: 315 KLLEEKL--KQSEAEKEEMRAAQ 335
>SB_52008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 31.5 bits (68), Expect = 2.5
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 406 RLNRNKKSHKMSVEKNDRVDV-MEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGDDYL 464
RL++N K HK +VE + D+ + +L+L A + LC RGD +L
Sbjct: 119 RLHQNSKCHKQAVECVREIPAKCRDRQGALEKIKGELDLDAPGIKVLCPTRWTVRGDSFL 178
Query: 465 KRIVMGY 471
RI+ Y
Sbjct: 179 -RIIQNY 184
>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 604
Score = 31.5 bits (68), Expect = 2.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 292 THCLHCFRRLADCEESAPVWCPKCSGVVFCSIE 324
T+C HC L + + V CP+C + S+E
Sbjct: 35 TYCRHCLESLVEHSQERTVSCPQCREKIVISVE 67
>SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 31.5 bits (68), Expect = 2.5
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 362 QSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKN 421
+ D+ET T+ + N+ K +E L D +KK + + + N + S V+ +
Sbjct: 74 KKDMETQETLKT----NNNKKIEHHELADKNKKSKKKRKRDDNDEENNVESSPCKKVKGS 129
Query: 422 DRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGDDYLKRIVMGYFLTECLKHAG 481
+ D ED +D+ + E + K + + + + +KR+ LTE L H G
Sbjct: 130 EPGDTTEDNNQDEKHTE---KFKWSSIIKRVLR-EAPNNELSVKRL-RKKVLTEFLSHGG 184
Query: 482 FFKNCNKNNL 491
K+ N N L
Sbjct: 185 STKSYNNNEL 194
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 31.5 bits (68), Expect = 2.5
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 360 VTQSDLETCLTIHSK-YISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSV 418
V S+L LT + K D+K+V G + + +K ++ + K H++
Sbjct: 1060 VNTSELRHFLTTYDKAQHGTDVKSVNGKEAGESDCQLRKQLEIAQAQLKKCEKIIHRLYA 1119
Query: 419 EKND---RVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGDDYLKR 466
E +D V +E KL+ + +EKL K + L G D L++
Sbjct: 1120 ENSDLNKTVLKLEGKLKSSSRSQEKLLRKRVLLQKLVERLSNHVGKDQLEQ 1170
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 31.5 bits (68), Expect = 2.5
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 611 EDWPTMKQMNNDSISYIRCSNLACRGKLRGSVQRMGDRCSLCSTPIDKDLVTVKIDTINK 670
ED ++ N SIS +R + C+ + S Q+ R S + + T+ + +++
Sbjct: 81 EDEDDAREANKRSISPVRRKSYECQISGKNSPQK---RSRSASPRLSERSATISSEPVHE 137
Query: 671 CTAQYQEGAKLMDKEMPEEATATLCSAIDSFHEAG-RPPH 709
T + + +KE P+E + A HE+ +PP+
Sbjct: 138 GTKETSDVGDRKEKETPQEGSVKSTPADIVVHESSPKPPN 177
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 31.5 bits (68), Expect = 2.5
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 333 YHSFECQFL-DLFVGSGMSILSHIALRMVTQSDLETCLTIHSKYISNDIKTVEGSVLNDI 391
Y ++ C L + VGS S SH++L LE H K + + +E + DI
Sbjct: 258 YENYRCDKLASMTVGSPSSSPSHVSLSKSPLEQLEAEKDDHEKKLKKMEQEMEQ--VFDI 315
Query: 392 EGVAKKSKMKSRKERL--------NRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLEL 443
+ KK K+K + L N+ ++ K EK + + + + ED+ ++KLE
Sbjct: 316 KVKEKKKKLKDSEAELGKKHEQMTNQLEQQLKELEEKRKKFEKEKKEYEDQRLADKKLER 375
Query: 444 KAAQVYSL 451
+ SL
Sbjct: 376 SDSSSKSL 383
>SB_27080| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
Length = 462
Score = 31.5 bits (68), Expect = 2.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 292 THCLHCFRRLADCEESAPVWCPKCSGVVFCSIE 324
T+C HC L + + V CP+C + S+E
Sbjct: 35 TYCRHCLESLVEHSQERTVSCPQCREKIVISVE 67
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 31.5 bits (68), Expect = 2.5
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 376 ISNDIKTVEGSVLNDIEGVAKKSKMKSRKER---------LNRNKKSHKMSVEKND-RVD 425
+ ++K +E +E + KK+K + K+R L+R ++ K E+N+ R +
Sbjct: 672 VEAELKLIEDEHKQRLEELEKKTKKEEEKKRSEHVNNDEELDRLQEEIKQMGEENEKRYE 731
Query: 426 VMEDKLE-DKNNFEEKLELKAAQVYSLCT-HSDRRRGDDYLKRIVMG 470
+ K+E DK +EE+ +L+ ++ + ++R GD +K +G
Sbjct: 732 EEKQKIEDDKKRWEEERKLREDEINQMFNDDQEKREGDWRIKESGIG 778
>SB_48225| Best HMM Match : DUF234 (HMM E-Value=5.3)
Length = 242
Score = 31.1 bits (67), Expect = 3.4
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 381 KTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDK--NNFE 438
K EG +IE ++ + K K+R +N + + +VE DRVDV +D + ++F+
Sbjct: 85 KRFEGLEAEEIEALSLQEYKKLEKKRAKKN--AWRAAVELTDRVDVNDDNGNPRPVDDFQ 142
Query: 439 EKLELK 444
+ +L+
Sbjct: 143 PRAQLR 148
>SB_15201| Best HMM Match : Tropomyosin (HMM E-Value=0.24)
Length = 253
Score = 31.1 bits (67), Expect = 3.4
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 358 RMVTQSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKK---SH 414
R TQ +LET + ++ + KT + ++ + ++ +M KE K +
Sbjct: 91 RRRTQDNLETTKFLEGSHVDLEGKTKDIQQAHEYAALMRRKRMAKEKEIHALEDKIAIAE 150
Query: 415 KMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRR 458
+ + DR V+ +KL + + ++ ++VY+ D+R
Sbjct: 151 RRCTKAEDRAFVIREKLATHRHLQGNPQISESEVYTGNDDMDKR 194
>SB_39156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 31.1 bits (67), Expect = 3.4
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKN--NFEEKLELKAAQVYSL 451
++ K +++ E + R +K KM E+ + + E KN N E ELKA++VYS+
Sbjct: 133 ERLKRRAKSEAIRRMRKQSKMQQEREKAYEKRVQR-ETKNGKNSAEMNELKASKVYSV 189
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 30.7 bits (66), Expect = 4.5
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 390 DIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVY 449
D+E +SK+ + LN +KS K + +NDR D + K + ++ +E EL+ Y
Sbjct: 71 DVEIFKNRSKIAYLENELNSAEKSQKRARVENDR-DSEKHKRDLRDKEQELSELRKTVKY 129
Query: 450 SLCTHSDRRRGDDYLKRIVMGY 471
+L + LK+ GY
Sbjct: 130 ALDQEKLAKEQFGDLKKEFEGY 151
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 30.7 bits (66), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 292 THCLHCFRRLADCEESAPVWCPKCSGVVFCSIE 324
T+C HC L + + V CP+C + S+E
Sbjct: 35 TYCRHCLESLVEHSKECTVSCPQCREKIEISVE 67
>SB_2107| Best HMM Match : zf-B_box (HMM E-Value=3.9e-08)
Length = 599
Score = 30.7 bits (66), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 292 THCLHCFRRLADCEESAPVWCPKCSGVVFCSIE 324
T+C HC L + + V CP+C + S+E
Sbjct: 44 TYCRHCLESLVEHSKECTVSCPQCREKIEISVE 76
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 30.7 bits (66), Expect = 4.5
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 362 QSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKN 421
QS + T LT + + +KT +G++ I+ V + + ER+ R+K+ ++KN
Sbjct: 611 QSKINT-LTDENNSLKVRLKTTDGTIERQIQQVESLTVQLAESERMLRDKEEDMEDLDKN 669
Query: 422 DR--VDVMEDKLEDKNN 436
+ ++ ++ KL N+
Sbjct: 670 SKNEINSLKAKLAKAND 686
>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
Length = 591
Score = 30.7 bits (66), Expect = 4.5
Identities = 21/112 (18%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 348 GMS-ILSHIALRMVTQSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKER 406
GM+ +++H +R T +E ++ + S ++ E +L + G+ + + S +
Sbjct: 35 GMTHLITHARVRSSTSETIEPYNSLSNSQPSR-LRVAESRILPSLVGMKRLKRSLSLRSS 93
Query: 407 LNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRR 458
R +SH+ V +ND V + + +E+ ++ +C + R+
Sbjct: 94 RRRIPESHRPQVWENDSYKVRNGGVSFPVKYVGAIEVTESRGTQVCAEAFRK 145
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 30.3 bits (65), Expect = 5.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 292 THCLHCFRRLADCEESAPVWCPKCSGVVFCSIE 324
T+C HC LA+ + + CP+C + S++
Sbjct: 34 TYCRHCLESLAEHSQGDSISCPQCREKIQISVD 66
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.3 bits (65), Expect = 5.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEK 440
K+ K K +K ++ ++ H EK++R E+K DK+ E+
Sbjct: 189 KRHKDKKKKREESKERRRHSDKAEKSERKREKEEKKRDKSEKRER 233
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 30.3 bits (65), Expect = 5.9
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 330 VSSYHSFECQFLDLFVGSGMSILSHIALRMVTQSDLETCLTIHSKYISNDIKTVEGSVLN 389
V + F C+ F+ +G ++ H+ R Q + + H Y +N IK L+
Sbjct: 585 VKAVSGFNCRLCKTFIMNGADVMKHVKARK-HQKNYRQYVIDHPSYEANQIK--RNKELS 641
Query: 390 DIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLE 432
D+ G ++ +M + + H+ +V + + +E
Sbjct: 642 DMLGQSEGQEMLLYEVEDEEKRAPHRYYSSDRPQVQITKYMVE 684
>SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 30.3 bits (65), Expect = 5.9
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 393 GVAKKSKMKSRKERLNRNKK---SHKMSVEKNDRVDVMEDKLEDKNNFEEKLE 442
G K+SK K ++E RN+K HK EKN++ E+K + N +E+ E
Sbjct: 14 GETKRSKEKDKQEENARNEKKETKHKKQQEKNEK---KEEKRHEGGNKQEENE 63
>SB_41353| Best HMM Match : HLH (HMM E-Value=1.2)
Length = 500
Score = 30.3 bits (65), Expect = 5.9
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 63 NKEVMEALTEVLSRIQPLHRGKDARISSQRRGDA-QSALKNEDLMKAL-ALASQAVL-RA 119
+++++E +V SR+ RGKD R+ A Q ++ E L + L +L ++ +L R
Sbjct: 168 DRKIIELYDDVSSRVSASPRGKDNDKKYARQDTAVQLSIDIETLSEQLVSLVAEHILDRE 227
Query: 120 PVTGENEAIDGGVSLALALWLRSEILLKLNRPQXXXXXXXXXXXXXXPARMRAHYYWRMG 179
VTG EA+ LAL +SEI L+ P H WR G
Sbjct: 228 DVTGWKEALK---ETHLALNKQSEINTSLHHSYASLDKKMNTVSHSFP----CHGRWRWG 280
>SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 5.9
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 365 LETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKNDRV 424
L+T L+ SNDIK+ +L+ + G + K K +K + KK + + + N++
Sbjct: 142 LQTALSGPLATRSNDIKSTCVRLLSTLSGTKETPKKKEKKTQ----KKEKQTNGKTNEQT 197
Query: 425 DVMEDKLEDKNN 436
+V E + + K N
Sbjct: 198 EVNEPRKKKKKN 209
>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
Length = 1284
Score = 30.3 bits (65), Expect = 5.9
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 416 MSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHSDRRRGD--DYLKRIVMGYFL 473
M +EK + ED N E +LE + A SLC+ SDR + + ++ ++ G
Sbjct: 829 MEIEKGKSTALEEDYESALRNLENQLEGERALNKSLCSQSDRTLTELQNQVENLLEG--- 885
Query: 474 TECLKHAGFFKNCNKNNLTKAQQSICELIVRNLQLLQFNAHEIYETVRGEHQFSGSKPL 532
+ L H KN NL + ++ + + + + LQ + ++ + + + +K L
Sbjct: 886 NQRLVHEREEKNLLIKNLQEVSENKTKQLSKMQEELQTTSVQLRDALAKVEELKSNKEL 944
>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1553
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 362 QSDLETCLTIHSKYISNDIKTVEGSVLNDIEGVAKKSKMKSRKERLNRNKKSHKMSVEKN 421
Q +LE+ L +K ISN + +E ++ +E + S++ K+R R+ KS + +
Sbjct: 1303 QLELESKLNAANKRISNLEERLEKKQMSSLESSEQLSQIIEDKDRAIRDLKSELSELRER 1362
Query: 422 DR 423
DR
Sbjct: 1363 DR 1364
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 29.9 bits (64), Expect = 7.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 396 KKSKMKSRKERLNRNKKSHKMSVEKNDRVDVMEDKLEDKNNFEEKLELKAAQVYSLCTHS 455
+K K +S K RL R ++S K ++ + + K + K++ ++ + V L TH
Sbjct: 210 RKRKRESAKHRLKRKRESVKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLIVSVVELVTHD 269
Query: 456 DRRRGDD 462
D DD
Sbjct: 270 DDDGDDD 276
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 294 CLHCFRRLADCEESAPVWCPKCSGVVFCSIECRDTAVSSYHSFECQFLDLFVGSGMSILS 353
C +C +C++ P CPK FC+ D V F C + +G S++S
Sbjct: 841 CGYCGGGSGNCKDVYPSECPKYKEWGFCTDPKYDKYVREVCKFTCNYCKYTLGYQPSVIS 900
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,335,569
Number of Sequences: 59808
Number of extensions: 1009148
Number of successful extensions: 2919
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2862
Number of HSP's gapped (non-prelim): 86
length of query: 743
length of database: 16,821,457
effective HSP length: 87
effective length of query: 656
effective length of database: 11,618,161
effective search space: 7621513616
effective search space used: 7621513616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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