GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.3  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   7.1  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    24   9.3  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 86  SESAKLVETGQEIGPVRARTCVPAKDFSKK 115
           S S +L ETG+E  P +A   VP +  S K
Sbjct: 431 SPSTELPETGKEQPPNKAEPAVPTEASSTK 460


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 86  SESAKLVETGQEIGPVRARTCVPAKDF 112
           SES KL+   +++G     TC+ + DF
Sbjct: 289 SESGKLLTALEKVGQANDHTCLASIDF 315


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 37 STKGIKCYNCLSFDHP--GCWDPDHPDYANITIPNIDCYIPGMEFLCI 82
          S + I+  N    D P    W  D+ D A I I N+D  +   + LC+
Sbjct: 3  SIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCV 50


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,462
Number of Sequences: 5004
Number of extensions: 21120
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)