GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    28   3.1  
01_01_0595 - 4430738-4430785,4430904-4432679                           27   7.1  
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    27   9.4  

>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 59  HPDYANITIPNIDCYIPGMEFLCIVITSESAKLVET-GQEIGPVRARTCVPAKDFSKKTV 117
           +P Y +  IP  D  + GM++L   I + S K++E  G E   V     V +     K  
Sbjct: 206 YPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVR 265

Query: 118 SYSMCSKLSKELSASEIFSRIA 139
             S      + LS S    RIA
Sbjct: 266 IVSPDKDFFQILSPSLRLLRIA 287


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 73  YIPGMEFLCIVITSESAKLVETGQEIGPVRARTCV-PAKDFSKKTVSYSMCSKLSKELSA 131
           +IP  ++ C V T+ +AK    G +  P   R C+ PA+  + K  + +  + ++  L  
Sbjct: 444 FIPDGDWFCSVCTAAAAK-KSKGNKPPPPPPRCCLCPARGGAMKRTTDARWAHIACALLV 502

Query: 132 SEIFSR 137
            E+F R
Sbjct: 503 PEVFFR 508


>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
            30062391-30062464,30062547-30062629,30063044-30063147,
            30063526-30063665,30063736-30063783,30063939-30063991,
            30064178-30064262,30064346-30064412,30064496-30064606,
            30065262-30065283,30066244-30071110,30071186-30071374,
            30071463-30071577,30072329-30073388,30074247-30074694,
            30074966-30075019,30075105-30076898,30076989-30077949,
            30078271-30078384,30078459-30078613,30078934-30079026,
            30079341-30079613,30093423-30093975,30094465-30094540,
            30094619-30094718
          Length = 4025

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 88   SAKLVETGQEIGPVRARTCVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAVTRPHCTL 147
            S  L   G E+  V A  C    DF        +  K S ELS   +  ++AV R    L
Sbjct: 1465 SGALTSAGNELNAVHAMACFDGGDFHSAWGYLDLTPKSSSELS---LDPKVAVERSELML 1521

Query: 148  CKKHL 152
             +  L
Sbjct: 1522 LRAML 1526


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,984,239
Number of Sequences: 37544
Number of extensions: 132708
Number of successful extensions: 259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 14,793,348
effective HSP length: 76
effective length of query: 83
effective length of database: 11,940,004
effective search space: 991020332
effective search space used: 991020332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)