GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          29   2.4  
SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)                   29   2.4  
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               28   3.1  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  27   7.2  
SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)               27   9.5  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)                    27   9.5  
SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096)                    27   9.5  

>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 62   YANITIPNIDCYIPGMEF 79
            YA++ +PN+DC  P  EF
Sbjct: 1749 YASLALPNVDCQAPANEF 1766


>SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)
          Length = 540

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 62 YANITIPNIDCYIPGMEF 79
          YA+I +PN+DC  P  EF
Sbjct: 35 YASIALPNVDCKAPNDEF 52


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/54 (31%), Positives = 21/54 (38%)

Query: 103 ARTCVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAVTRPHCTLCKKHLCTDA 156
           A TC   K F K+TV   +  K S   S          +R  C  C+   C DA
Sbjct: 21  AYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQACRLQRCFDA 74


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 102  RARTCVPAKDFSKKTVSYSMCSKLS-KELSASEIFS 136
            R R  V   D+  K   YS C+K+S KEL + ++ +
Sbjct: 1135 RRRPTVETHDYHTKVPDYSSCTKVSDKELESGQVLT 1170


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 36   PSTKGIKCYNCLSFDHPGCWDPDHPDYANITIPNIDCYIPGMEFL 80
            PS   IKC +         + PD P   NI +   D +IPG  FL
Sbjct: 2000 PSKAEIKCQDNGDGSCNVTYVPDEPGEYNINVKFADKHIPGSPFL 2044


>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 102 RARTCVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAVTRPHCT 146
           RAR    AKD S +    S CS L+K+   ++   R+   R H T
Sbjct: 300 RARRRACAKDRSARPSGASSCSALNKDSGNTKSTRRLGSVRGHPT 344


>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 61  DYANITIPNI-DCYIPGMEFLCIVITSESAK 90
           D+A +   N+ DCY+PG +  C      S K
Sbjct: 380 DFAAVVFHNVSDCYMPGNDIECCYTIKSSVK 410


>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 44  YNCLSFDHPGCWDPDHPDYANITIPNIDCYIPGMEFLCIVITSESAKLVETGQEIGPVRA 103
           +NC  F H GC  P + DY  +     D  +   +    VIT E    V    E+GP   
Sbjct: 102 FNCKLFPHLGCLPPANGDYQEMI---CDSCMDSQQ----VITKEE---VNGSIEVGPSDE 151

Query: 104 RTCVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAVT 141
           +       F K+    +   K SKE     +++ + V+
Sbjct: 152 KPATKNDKFKKEKQDQTF-EKNSKENLDKTLYNTLGVS 188


>SB_42412| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-33)
          Length = 644

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 103 ARTCVPAKDFSKKTVSYSMCSKL--SKELSASEIFSRIAVTRPH-CTLCKK 150
           ART    KD S+K+    +C ++  S EL    I +  A  RPH C  C K
Sbjct: 312 ARTISTVKDASEKSYDCRVCERVFKSHELLEKHIKNH-AENRPHKCPQCPK 361


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 42  KCYNCLSFDHPGCWDPDHPDYANITIPN 69
           K Y  L+ DHP C++     YA++ +P+
Sbjct: 452 KQYEKLNGDHPVCFEAKERVYASVRVPH 479


>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
          Length = 345

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 39  KGIKCYNCLSFDHPGCWDPDHPDYANITIPNIDCYIPGMEFLCIVITSESAKLVETGQEI 98
           +G++C +C  ++H  C D   P Y ++   +     P  +      T  SA  +E     
Sbjct: 110 RGLQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSF 169

Query: 99  GPVRARTCVPAKDFSKKTVSYS 120
             + ++T  P    + +  S S
Sbjct: 170 NFLPSQTSSPVAKTTPRNSSTS 191


>SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096)
          Length = 210

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/82 (20%), Positives = 33/82 (40%)

Query: 39  KGIKCYNCLSFDHPGCWDPDHPDYANITIPNIDCYIPGMEFLCIVITSESAKLVETGQEI 98
           +G++C +C  ++H  C D   P Y ++   +     P  +      T  SA  +E     
Sbjct: 110 RGLQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSF 169

Query: 99  GPVRARTCVPAKDFSKKTVSYS 120
             + ++T  P    + +  S S
Sbjct: 170 NFLPSQTSSPVAKTTPRNSSTS 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,859,260
Number of Sequences: 59808
Number of extensions: 167803
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 16,821,457
effective HSP length: 77
effective length of query: 82
effective length of database: 12,216,241
effective search space: 1001731762
effective search space used: 1001731762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)