GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    28   3.6  
Z81509-3|CAB04156.1|  532|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    27   4.7  
Z81098-4|CAB03181.1|  180|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans UDP-galactopy...    27   6.3  
AF324057-1|AAK01418.1|  180|Caenorhabditis elegans Ly-6-related ...    27   6.3  
AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 106 CVPAKDFSKKTVSYSMCSKLSKELSASEIFSRI 138
           C+P   FSK+T+ Y + S L+++L  S I  ++
Sbjct: 6   CIPHGTFSKQTIYYQLWSFLNRKLILSCIIMQL 38


>Z81509-3|CAB04156.1|  532|Caenorhabditis elegans Hypothetical
           protein F21A3.5 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 124 KLSKELSASEIFSRIAVTRPHCTLCKKHLCTDAA 157
           K  + L  SE + R+  TR H T+ K H  T+ A
Sbjct: 388 KHQRSLEISEEWERLQATREHYTVMKNHTETEMA 421


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 110 KDFSKKTVSYSMCSKLSKELSASEIF-SRIAVTRPHCTL 147
           KDF      +  C K S   S+S IF +R+++T+ H +L
Sbjct: 303 KDFRIGVKDFFKCGKKSDNTSSSTIFTTRLSLTKSHLSL 341


>Z81098-4|CAB03181.1|  180|Caenorhabditis elegans Hypothetical
          protein K07A12.6 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 37 STKGIKCYNCLSFDHPGCWDPDHPDYANITIPNID 71
          S + +KC++C SF++   +D D      + +P  D
Sbjct: 17 SVELLKCFSCASFEYRVLFDKDTSLSRKVRVPKFD 51


>AJ871144-1|CAI38753.2|  476|Caenorhabditis elegans
           UDP-galactopyranose mutase protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 72  CYIPGMEFLCIVITSESAKLVETG 95
           C+I G EF+  VI  E  KL +TG
Sbjct: 446 CFIQGKEFIDRVILGEPEKLYKTG 469


>AF324057-1|AAK01418.1|  180|Caenorhabditis elegans Ly-6-related
          protein HOT-5 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 37 STKGIKCYNCLSFDHPGCWDPDHPDYANITIPNID 71
          S + +KC++C SF++   +D D      + +P  D
Sbjct: 17 SVELLKCFSCASFEYRVLFDKDTSLSRKVRVPKFD 51


>AF125442-8|AAD12787.2|  476|Caenorhabditis elegans Hypothetical
           protein H04M03.4 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 72  CYIPGMEFLCIVITSESAKLVETG 95
           C+I G EF+  VI  E  KL +TG
Sbjct: 446 CFIQGKEFIDRVILGEPEKLYKTG 469


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,689
Number of Sequences: 27539
Number of extensions: 123625
Number of successful extensions: 313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 12,573,161
effective HSP length: 76
effective length of query: 83
effective length of database: 10,480,197
effective search space: 869856351
effective search space used: 869856351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)