GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.051
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.63 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.9  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 27.9 bits (59), Expect = 0.051
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 106 CVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAVTRPHCTLCKKHLCTDA 156
           C  A+  +KK+ S   C K+   L A ++       R H   CK HLC  A
Sbjct: 6   CAAAEGQAKKSFSCKYCEKVYVSLGALKMH-----IRTHTLPCKCHLCGKA 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 102 RARTCVPAKDFSKKTVSYSMCSKLSKE 128
           RA  C+  KD+S   V++S  S+++ E
Sbjct: 473 RAAKCIIGKDYSLPMVNHSKSSRINIE 499


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 99  GPVRARTCVPAKDFSKKTVSYSMCSKLSKELSASEIFSRIAV 140
           G V A  C PA D  +KT + S  + +   +    +F  + V
Sbjct: 166 GVVSAGECGPAADVDEKTDANSWWALILVIVPCLTLFGNVLV 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,794
Number of Sequences: 429
Number of extensions: 1364
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)