GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002075-TA|BGIBMGA002075-PA|undefined
         (159 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59725.1 68414.m06724 DNAJ heat shock protein, putative simil...    30   0.63 
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein...    28   2.6  
At3g56410.2 68416.m06274 expressed protein                             28   3.4  
At3g56410.1 68416.m06273 expressed protein                             28   3.4  
At2g27610.1 68415.m03349 pentatricopeptide (PPR) repeat-containi...    27   5.9  
At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate syntha...    27   7.8  
At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /...    27   7.8  

>At1g59725.1 68414.m06724 DNAJ heat shock protein, putative similar
           to SP|Q9QYJ3 DnaJ homolog subfamily B member 1 (Heat
           shock 40 kDa protein 1) {Mus musculus}; contains Pfam
           profile PF00226: DnaJ domain
          Length = 331

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 61  DYANITIPNIDCYIPGMEFLCIVITSESAKLVETGQEIGPVRA--RTCVPAK 110
           D  N+TIP +D   PG E   IVI SE   + + G + G +R     C P++
Sbjct: 267 DGRNLTIPVLDIVKPGQE---IVIPSEGMPISKEGSKRGDLRINFEICFPSR 315


>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
          contains Pfam domain, PF00098: Zinc knuckle
          Length = 254

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 39 KGIKCYNCLSFDHPGCWDPDH 59
          K IKCY C S  H  C +P H
Sbjct: 51 KNIKCYVCNSLGHLCCIEPGH 71


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 42  KCYNCLSFDHPGCWDPDHPDYANITIP 68
           KC  C S  H   W+PD  D+ N TIP
Sbjct: 86  KCGGCDSILHAKRWEPDGNDHTN-TIP 111


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 42 KCYNCLSFDHPGCWDPDHPDYANITIP 68
          KC  C S  H   W+PD  D+ N TIP
Sbjct: 39 KCGGCDSILHAKRWEPDGNDHTN-TIP 64


>At2g27610.1 68415.m03349 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 868

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 76  GMEFLCIVITSESAKLVETGQEIGPVRARTC--VPAKDFSKKTVS-YSMCSKLSKELSAS 132
           G+ F+ +      A LVE G++   +  R C   P K+ +   V  YS   +L K +   
Sbjct: 596 GVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVI 655

Query: 133 EIFSRIA---VTRPHCTLCKKHLCTD 155
           E     A   + R     C+ H  T+
Sbjct: 656 ENMPNPAGSTIWRTILAACRVHKKTE 681


>At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 795

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 109 AKDFSKKTVSYSMCSKLSKELSASEIFSRIAVT 141
           A DF K T++  +CSKL +  +++E+ + +A T
Sbjct: 461 ADDFMKLTLTNILCSKLIEITTSAELGAGLAAT 493


>At1g48100.1 68414.m05368 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           [Glycine max]; contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 475

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 50  DHPGCWDPDHPDYANITIPNIDCYIPG 76
           D P CW+  +     +TIP IDC + G
Sbjct: 436 DDPFCWNA-YGKQETLTIPPIDCLLDG 461


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,819
Number of Sequences: 28952
Number of extensions: 112944
Number of successful extensions: 271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 12,070,560
effective HSP length: 76
effective length of query: 83
effective length of database: 9,870,208
effective search space: 819227264
effective search space used: 819227264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)