GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002074-TA|BGIBMGA002074-PA|IPR013769|HCO3- transporter,
cytoplasmic, IPR011531|HCO3-transporter, c-terminal, IPR003020|HCO3-
transporter, eukaryote, IPR001717|Anion exchange protein
         (853 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    27   0.54 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    26   1.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    26   1.2  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 727 LVPMAVLFGVFLYMGISALGGIQFWDRCILLLKPVKHHPQLPYVRRVPTLKMHMYTLIQV 786
           +VP+ VL  +F Y  I     I+ W      L+P       P  R     +  + T+ Q 
Sbjct: 213 MVPLVVL--IFTYTSIC----IEIWQSSESSLRPRSSQKSAPGKRTPLISRAKINTVKQT 266

Query: 787 GGVVVLYAVKSSRFSLA 803
             V+V+Y   S+ F LA
Sbjct: 267 IAVIVMYIACSTPFILA 283


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 667 PWQCVATVRSVSHVSALTIMSTTHAPGDKPHIVEVKEQRLT 707
           P++C+   +S S  + LT    TH+ G+KP    V ++R +
Sbjct: 21  PYRCIDCNKSFSQAANLTAHVRTHS-GEKPFRCPVCDRRFS 60


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 667 PWQCVATVRSVSHVSALTIMSTTHAPGDKPHIVEVKEQRLT 707
           P++C+   +S S  + LT    TH+ G+KP    V ++R +
Sbjct: 277 PYRCIDCNKSFSQAANLTAHVRTHS-GEKPFRCPVCDRRFS 316


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,722
Number of Sequences: 317
Number of extensions: 7226
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 853
length of database: 114,650
effective HSP length: 63
effective length of query: 790
effective length of database: 94,679
effective search space: 74796410
effective search space used: 74796410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)