GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002074-TA|BGIBMGA002074-PA|IPR013769|HCO3- transporter,
cytoplasmic, IPR011531|HCO3-transporter, c-terminal, IPR003020|HCO3-
transporter, eukaryote, IPR001717|Anion exchange protein
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    78   6e-15
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    36   0.018
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    33   0.17 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    30   1.6  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   8.3  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 271 LFGG-VIRDMKRRYPFYVSDFVDALNGQCVAATIFMYFAAVSSAITFGGLLAEKTYGKIG 329
           +FG  ++ D+K+R P+Y SD++DA + + + A + +YF+ +   + F   +  KT    G
Sbjct: 11  IFGSEIVNDVKKRLPYYKSDWIDACHYRVLPACLNIYFSNLLPELAFALDMFAKTNNSFG 70

Query: 330 ISETLSSGYVRSAVEGDLQVFTSAGGVLFALVAGQPMMITGATGPLLLLDESLANFCHSY 389
           ++E L +  +              G V+FAL++ QP+ I G TGP+ + + ++ +  H  
Sbjct: 71  VNEVLLASVL--------------GSVVFALLSSQPLCIVGVTGPITVFNYTVYDIMHDR 116

Query: 390 GFDFLAARMYCGLWMIVIALCVASVEGSVAVKKITRFT 427
           G  +     +  LW ++    +A   G   VK IT+F+
Sbjct: 117 GTPYFPFLCWICLWSMIFHFIIAIANGVYFVKHITKFS 154



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 63/280 (22%), Positives = 117/280 (41%), Gaps = 16/280 (5%)

Query: 548 QARRALGDFGVPIAIVLMVG---ISCLVPVKTETLVVPAGLNPTTVRSWFVPLNPGLETI 604
           + R  L D+G+  +I+   G   I  +  V    L       PT  RSWF+        I
Sbjct: 214 KVRILLLDYGLVASIIFFSGFQHIGKMREVSLAKLPTTKAFEPTLSRSWFIKF----WKI 269

Query: 605 XXXXXXXXXXXXXXVYIIVFMETHIAELIIAKPERRLKKGSGFHMDIVIMSFVNALCGMF 664
                         + I+ + + +++ ++   P   L K +GFH D  ++     + G+ 
Sbjct: 270 PVGDVFLAIPFSIVLTILFYFDHNVSSVMAQDPSFPLTKPAGFHWDFFLLGITTGVSGIL 329

Query: 665 GAPWQCVATVRSVSHVSALTIMSTTHAPG--DKPH---IVEVKEQRLTGLLVAVMVGISV 719
           G P       ++  H +AL +    +     +K H   I  V EQR +  +  +M   ++
Sbjct: 330 GIPAPNGLIPQAPMHTAALCVKRVDYDEDEIEKTHKEVIDRVVEQRASNFIQGLMTVGTM 389

Query: 720 LASGWLCL--VPMAVLFGVFLYMGISALGGIQFWDRCILLLKPVKHHPQLPYVRRVPTLK 777
                L L  +P  VL G+F  MG SA+ G       I +L   K   +   +    + +
Sbjct: 390 TGPLLLVLHQIPQCVLAGLFWVMGFSAIFGNGITQNVIWMLSDRKVVSKNHTLNHCSSKR 449

Query: 778 -MHMYTLIQVGGVVVLYAV-KSSRFSLALPFFLVLMVPLR 815
            + +YT++Q+ G    +A+ +  + S+  P  ++L++P R
Sbjct: 450 VVWLYTILQLIGFGATFAITQVDKASIGFPIIILLLIPFR 489


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 723 GWLCLVPMAVLFGVFLYMG-ISALGGIQF 750
           GWLC +P++VLF VF+ +G I A G ++F
Sbjct: 493 GWLCALPISVLFSVFVILGLIIAAGSLRF 521


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 304 FMYFAAVSSAITFGGLLAEKTYGKIGISETLSSGYVRSAVEGDLQVFTSAGGVLFALVAG 363
           F Y   ++S I FGGL A    GK G+     S Y+    +   ++  S   + F ++  
Sbjct: 166 FRYVFLITSIIEFGGLFASN--GKRGVLSHFRSSYITCDSKALDRIVNSIVDI-FNVMLI 222

Query: 364 QPMMITGATGPLLLLDESLANFCHSYGFDFLAARMYCGLWMIVIA 408
           Q   I  A  P+L    S+A F   +   FL+ +    +W ++ A
Sbjct: 223 QFQRILFAESPILTFTASVAAFIEFFLSGFLSYKSLF-VWNVLFA 266


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 476 LLNSTSVGNSSVVAPAPPVSRLPPQPNTALFCTMLTLATFVL 517
           +L+S+++ +  V  P P  SR    PN+ L  T+L  +T +L
Sbjct: 401 ILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPIL 442



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 13  RTLQSLWLEENEALRSRCSGCSARAACRRHSVALLNLSERRRRSTHARPSAAGLDPREVE 72
           ++L S   +E +A + R    S   +  +HS A   L +    +TH  PS+A     E+ 
Sbjct: 856 KSLVSFMFKEQDANKKREDFHSGEVSAIQHSSAQNTLDDHVNTTTHESPSSAF---TEIL 912

Query: 73  YLAHASESQDELRRTHNDSILKRIPDDAE 101
               A E       T++ + LK   D ++
Sbjct: 913 ERLKAIEQNISTNHTNDSAALKSSEDHSK 941


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 53  RRRSTHARPSAAGLDPREVEYLAHASES 80
           RR S H  P+ AGL P EVE   + S++
Sbjct: 376 RRVSLHVDPTLAGLSPDEVENFYNKSKN 403


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,913
Number of Sequences: 5004
Number of extensions: 138247
Number of successful extensions: 495
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 7
length of query: 853
length of database: 2,362,478
effective HSP length: 79
effective length of query: 774
effective length of database: 1,967,162
effective search space: 1522583388
effective search space used: 1522583388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)