GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002073-TA|BGIBMGA002073-PA|IPR003020|HCO3- transporter,
eukaryote, IPR013769|HCO3- transporter, cytoplasmic
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   2.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   4.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   7.6  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 2   QQARQQAAGDDEVQLDEE 19
           +QARQ+A GDDE Q+ +E
Sbjct: 518 EQARQKAQGDDEAQIIDE 535


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 11/104 (10%)

Query: 226  QLDELLATEDGEAEWKETARWIKYEEDVEEGSARWGRPHVASL-----SFHSL-LNLRRC 279
            +L E L TE  EAE++ TA       +V E    W   H+A       +F  L L+   C
Sbjct: 1269 ELAERLYTEKSEAEFRLTANQHVILFNVAENELGWINEHMAKYKLDNNAFSGLRLSSAAC 1328

Query: 280  --LETGVVLLDLDEKDLPGVAYRVVESMVTEGLIEEDDKPVVMR 321
              L T  + +   E+ LP +  + VE +V E  +++D   +VMR
Sbjct: 1329 VALPTCGLAMAESERYLPKLITK-VEEIVYEAGLQKDS--IVMR 1369


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 234  EDGEAEWKETARWIKYEEDVEEGSARWGRPHVASL 268
            +D    W+    W KY +  +E  ARW +  +++L
Sbjct: 1242 DDEMLTWESYNEWKKYGKRFKEEQARWRQEELSNL 1276


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,156
Number of Sequences: 5004
Number of extensions: 54892
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 4
length of query: 378
length of database: 2,362,478
effective HSP length: 74
effective length of query: 304
effective length of database: 1,992,182
effective search space: 605623328
effective search space used: 605623328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)