GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002073-TA|BGIBMGA002073-PA|IPR003020|HCO3- transporter,
eukaryote, IPR013769|HCO3- transporter, cytoplasmic
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148...    32   0.87 
09_04_0292 - 16436918-16439233                                         31   1.5  
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    31   2.0  
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658...    29   6.1  
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309...    29   6.1  

>03_06_0449 -
           34013973-34014056,34014595-34014630,34014729-34014816,
           34015034-34015143,34015611-34015715,34015812-34015903,
           34016145-34016232,34016407-34016526,34016603-34016721,
           34017253-34018126
          Length = 571

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 132 DDEGLEESQRDQLSHRTDDPRALRRHKIQPKTST-VHVGRKDGGDKVQNILPDATYKKMY 190
           DD G E  + D      D+    RR ++  KT   + V  KD    ++  LP    K+M 
Sbjct: 213 DDHGAESKKSDDSGQIADEKPRPRRTRVLDKTGKKIRVANKDPVSDIEETLPPKKRKRM- 271

Query: 191 DHSPHAVSDAELQIRT 206
              P+  S+  L+  T
Sbjct: 272 KLDPYDTSNKRLEDST 287


>09_04_0292 - 16436918-16439233
          Length = 771

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 259 RWGRPHVASLSFHSLLNLRRCLETGVVLLDLDEKDLPGVAYRVVES 304
           R+G  HV  L+FHS  +L R L    +L   D++DL   A+RVVE+
Sbjct: 280 RFGADHVGDLNFHSNNDLSRTLVVDRLL--SDDRDLDR-AFRVVEA 322


>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 118 RKYSLQEGGERTASDDEGLEESQRDQLSHRTDDPRALRRHK 158
           RK   ++ G+R  S+D+  ++S++D+  H ++D    R+H+
Sbjct: 269 RKSQKEKKGQREDSEDDKPKKSRKDRRRHDSEDEEPRRKHQ 309


>05_07_0029 -
           27163121-27163818,27163992-27164067,27164184-27165896,
           27166285-27166364,27166516-27166684
          Length = 911

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 115 HKSRKYSLQEGGERTASD----DEGLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGR 170
           HK ++   ++ G+RT+ D     +G+++ Q   +S    D R L+++ ++          
Sbjct: 319 HKGQRNGFKDSGQRTSDDVLVSSQGVQKIQPKNISRENVDCRPLKQNNLKQNALPETYRA 378

Query: 171 KDGGDKVQ 178
            D G  VQ
Sbjct: 379 ADTGHMVQ 386


>01_03_0151 -
           13229861-13230347,13230442-13230540,13230701-13230918,
           13231210-13231317,13231366-13231518,13232962-13233015,
           13233276-13233374,13234458-13234551,13234638-13234715,
           13237696-13237766,13238321-13238416,13238505-13238582,
           13238683-13238751,13238830-13238897,13239038-13239115,
           13239190-13239289,13240002-13240061,13240488-13240579,
           13241730-13241779,13241870-13241954,13242035-13242134,
           13242933-13243013,13244827-13244907
          Length = 832

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 128 RTASDDEGLEESQRDQLSHRTDDPRALRRHKIQPKTSTVHVGRKDGGDKVQN 179
           R  +++ GLE+ + D  +  +D+  ++RR        T H  ++DGG K+ N
Sbjct: 618 RKKAEERGLEKEEEDYFNEDSDEEDSVRR--------TKHAQKQDGGAKLTN 661


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,159,846
Number of Sequences: 37544
Number of extensions: 438055
Number of successful extensions: 1156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 14,793,348
effective HSP length: 83
effective length of query: 295
effective length of database: 11,677,196
effective search space: 3444772820
effective search space used: 3444772820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)