GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002073-TA|BGIBMGA002073-PA|IPR003020|HCO3- transporter,
eukaryote, IPR013769|HCO3- transporter, cytoplasmic
         (378 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...   112   2e-26
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.6  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    24   7.9  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   7.9  

>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score =  112 bits (269), Expect = 2e-26
 Identities = 52/110 (47%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 223 VFVQLDELLATEDGEAEWKETARWIKYEEDVEEGSARWGRPHVASLSFHSLLNLRRCLET 282
           +F +++EL+   D E  WKETARW+K+EEDVEEG  RW +PHVA+LS HSL  LR  L  
Sbjct: 107 LFSEMEELVKEGD-EMAWKETARWVKFEEDVEEGGNRWSKPHVATLSLHSLFELRSLLLN 165

Query: 283 GVVLLDLDEKDLPGVAYRVVESMVTEGLIEEDDKPVVMRSLLLRHRHVHD 332
           G V+LD++   L  +A  V E+MV  G +  + +  V+ +LL RH+H H+
Sbjct: 166 GTVMLDMEAVSLEQIAELVCENMVNSGTLPVEARDKVIDALLKRHKHQHE 215


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)

Query: 28  GQGPPPSDATPRRD 41
           G GPPPS ATP  D
Sbjct: 341 GGGPPPSSATPSVD 354


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 57  TGPEQLEPATDPHLNQTT 74
           +GP Q   A+ PHL+Q+T
Sbjct: 364 SGPPQNHRASSPHLHQST 381


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 10/79 (12%)

Query: 249 YEEDVEEGSARWGRPHVAS-LSFHSLLNLRRCLETGVVLLDLDEK-------DLPGVAYR 300
           ++E +E+G  R+G P + + L+     N+   L TG  L+ +  K       D+P  A  
Sbjct: 328 FDETIEDGEMRYGIPKLTTKLADSDGFNV--LLFTGANLVSVQTKPYIPRIYDVPSAAQT 385

Query: 301 VVESMVTEGLIEEDDKPVV 319
           VV++     L+    K +V
Sbjct: 386 VVKANAVAPLLVPQKKYIV 404


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,175
Number of Sequences: 2123
Number of extensions: 13598
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 378
length of database: 516,269
effective HSP length: 65
effective length of query: 313
effective length of database: 378,274
effective search space: 118399762
effective search space used: 118399762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)