GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    71   1e-13
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   3.2  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   5.6  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   5.6  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.8  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 10  KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMST-ENEIDTAPLI 68
           K  LR  + + +  L +     QS  + ++V+    +K    + LYM+  + E+ T  LI
Sbjct: 5   KNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPKKEVRTRCLI 64

Query: 69  KHIQARGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGLDL 128
                 G   F+P+  G  +  ++      +++   K GI++   +  +    ET   +L
Sbjct: 65  DVAFKEGKNVFIPKCIGSHVMEMYQVFEKTESLTINKWGIAEPNGESRKIMDDETD-CEL 123

Query: 129 IIAPGVAFSRSGDRLGHGGGYYDKFITNLR---LNPETAPKI--VAVAFNCQVVD--EVP 181
           II PGVAF     RLGHG GYYD +I+  +   L  E+   +  V +    Q++   E+P
Sbjct: 124 IIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMFKVGICLKEQILPNREIP 183

Query: 182 TNEQDQKVDEVIFAE 196
            + +DQK+D ++  E
Sbjct: 184 MDTRDQKLDALVTPE 198


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 74  RGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKD 114
           R     +PQ    R+ ++H  T +++ M KT   +S   KD
Sbjct: 584 RSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKD 624


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 40  VINHSWYKSSSRIALYMSTENEIDTAPLIKHIQAR 74
           +I  +W  S+  ++LY ++ N  DTAP  K IQAR
Sbjct: 111 IILGTW-ASTMGLSLYAASRNRYDTAPQ-KLIQAR 143


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
          Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 4  IKPNPAKALLRNEIAAKIAALTNEEKK 30
          I  + AKA+L+N++  K A +T +E +
Sbjct: 66 ITVDAAKAILKNDVGIKCATITPDEAR 92


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 58  TENEIDTAPLIKHIQARGAAAFVPQYAGGR-MRMLHLETGDEQTMPKTKHGISQHGKDQA 116
           T  +  + P+++   A+G         G + +  L +    + T+ K K  +   GK   
Sbjct: 67  TAGQTSSEPILRQCLAKGIGRAALINVGEKELEPLSVAKLLKATVEKEKSNLVLLGKQAI 126

Query: 117 RDDALETGGL 126
            DDA +TGG+
Sbjct: 127 DDDAHQTGGM 136


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 8   PAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSR 51
           P   LLR  I   +  +  +  + +++ VY   I ++W+  S R
Sbjct: 392 PTSVLLRQPIDTYLETMFPQIARNKTEHVYINHIGNAWFAMSER 435


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,698
Number of Sequences: 5004
Number of extensions: 36537
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 6
length of query: 196
length of database: 2,362,478
effective HSP length: 69
effective length of query: 127
effective length of database: 2,017,202
effective search space: 256184654
effective search space used: 256184654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)