Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
(196 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1025 + 23365590-23365698,23366288-23366425,23366491-233666... 74 7e-14
07_03_0523 + 19030078-19031109 30 1.1
07_03_0132 - 14011468-14012124 29 1.9
03_02_0685 + 10401281-10401463,10403296-10403700 29 2.5
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 3.3
01_01_1103 - 8744873-8745724 28 4.4
01_01_0752 - 5808798-5810183 28 4.4
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 27 7.6
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 27 7.6
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 27 7.6
>07_03_1025 +
23365590-23365698,23366288-23366425,23366491-23366649,
23366768-23366809,23366885-23366930,23367027-23367147
Length = 204
Score = 74.1 bits (174), Expect = 7e-14
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 10 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 67
K LR+E+ + ALT E++ + Q + ++N SW+K S R+ Y+S E+DT+ +
Sbjct: 14 KRALRSEVRRALRALTPEQRASEDQAIQNAILNSSWFKESKRLCAYISCAQLREVDTSKV 73
Query: 68 IKHI----QARGAA--AFVPQY--AGGRMRMLHLETGDEQTMPKTKHGISQ----HGKDQ 115
+ + G A +VP+ MRML + T D+ + K I +
Sbjct: 74 LSEVLSPNSEHGHAKDLYVPRVEDKNRNMRMLKITTMDD--LVKNSMNILEPSPLDASGN 131
Query: 116 ARDDALETGG-LDLIIAPGVAFSRSGDRLGHGGG 148
AR++ L T +DL + PG AF R+G RLG GGG
Sbjct: 132 AREEVLSTSSPVDLFLLPGQAFDRTGRRLGRGGG 165
>07_03_0523 + 19030078-19031109
Length = 343
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 107 GISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGG 147
G+ + G+DQA D GG+ +++ G R G +G G
Sbjct: 208 GMEERGQDQAADMKASGGGVGVVVRAGDYLHRYGSAVGMSG 248
>07_03_0132 - 14011468-14012124
Length = 218
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 106 HGISQHGKDQARDDALETGGLDLII-APGVAFSRSGDRLGHGGG 148
HG + G ++ARD G I + GVAF G R HG G
Sbjct: 121 HGREEDGGERARDHGRSREGAKTIERSEGVAFYSGGKRAEHGRG 164
>03_02_0685 + 10401281-10401463,10403296-10403700
Length = 195
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 12 LLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSS---RIALYMSTENE 61
LLRN++ A +A L ++ S +Y V WY+ R LYM N+
Sbjct: 38 LLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNK 90
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 5 KPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEID 63
KP A A L++ A A E+K+ +IV ++ SW + R+A+ + E+E+D
Sbjct: 249 KPPDAHAFLQH--VATFAVAEKEDKELYRRIV----VSFSWRRQMPRLAITLGLEDEMD 301
>01_01_1103 - 8744873-8745724
Length = 283
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 85 GGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLG 144
GGR R +E+ + K + ++ HG D A A G L +AP V+ G G
Sbjct: 217 GGRKRRGRRTGREEEELEKERLFMALHGYDVAVARACHAGALHPSVAPNVSGMGRGAEDG 276
Query: 145 HG 146
G
Sbjct: 277 WG 278
>01_01_0752 - 5808798-5810183
Length = 461
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 34 QIVYEKVINHSWYKSSSRIALYMSTENE 61
+I EK++ H W+K + A+ +S NE
Sbjct: 254 RITVEKLVEHPWFKKGYKPAVMLSQPNE 281
>07_03_1342 - 25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 141 DRLGHGGGYYDKFITNLRLNPETAPKIVAVAFNCQVVDEVPTNEQDQKVDEVIFA 195
+R G G +D+ IT L +P +++A++ C +P NE+ +FA
Sbjct: 1004 NREGRGTDCFDRDITGLEESPRVMDELLAISLRC----ILPVNERPNMKTPSMFA 1054
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 30 KRQSQIVYEK-VINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARG 75
+R+ + +Y + V++ SW + R+AL + E D A +I+ + A+G
Sbjct: 254 EREDRGIYRRIVVSFSWRRQMPRLALTLGLEE--DMADIIEELIAKG 298
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 3 PIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIA 53
P K + L+N + A+ A TN +SQI+ +K N + ++SS+I+
Sbjct: 594 PEKDISSNKPLQNRVLAEEAEKTNVTADNKSQIIQDKKNNGATTENSSQIS 644
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,098,929
Number of Sequences: 37544
Number of extensions: 267120
Number of successful extensions: 556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 10
length of query: 196
length of database: 14,793,348
effective HSP length: 78
effective length of query: 118
effective length of database: 11,864,916
effective search space: 1400060088
effective search space used: 1400060088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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