GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (196 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   1.1  
SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)                   29   2.6  
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   5.9  
SB_36768| Best HMM Match : DSBA (HMM E-Value=0.057)                    28   5.9  
SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    27   7.8  

>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 58   TENEIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGK 113
            T N+   AP +   Q  GAA+   +  GG   M   +TG   +M K + G  Q  K
Sbjct: 1005 TRNQTGGAPSLTRKQTGGAASLTRKQTGGAASMTRKKTGGAASMTKKQTGGRQPEK 1060


>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 635

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 91  LHLETGDEQTMPKTKHGISQHGKDQAR-DDALETGGLDLIIAPGVAFSRSGDRLGHGGGY 149
           L  +TGDE    K  HG+    KDQ + +DAL      L +     F ++GD  G    Y
Sbjct: 527 LFQKTGDESCQAKAYHGMGNVHKDQGKYEDALNNYQHALSL-----FQKTGDESGQANAY 581


>SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)
          Length = 605

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 4   IKPNPAKALLRNEIAAKIA--ALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENE 61
           IK NP+  +++   A  +   A T  +++  ++ ++      +   S   +   +++E++
Sbjct: 81  IKFNPSPLMVKTIKAHCLIDYAATQNKQEAVAESLFHHFFELAHNISCEDVLQQVASESD 140

Query: 62  IDTAPLIKHIQARGAAAFV 80
           +DT+  I HIQ +G AA V
Sbjct: 141 LDTSAAIMHIQDQGVAARV 159


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 136  FSRSGDRLGHGGGYYDKFITNLRLNPETAPK 166
            FSR+    G+GGG+YD+  + L+   +  PK
Sbjct: 1057 FSRTSFSQGYGGGFYDEAPSKLQPFGQRGPK 1087


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/67 (20%), Positives = 29/67 (43%)

Query: 67   LIKHIQARGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGL 126
            L K + A    + +P Y  G   +  + T D+++ P   H    +  D  R+  +++ G 
Sbjct: 4959 LNKRMLAHEHESIIPGYQEGDEIITTITTSDQESAPSEAHNNLSNRTDNLRESEVQSPGF 5018

Query: 127  DLIIAPG 133
            +   + G
Sbjct: 5019 ETFESSG 5025


>SB_36768| Best HMM Match : DSBA (HMM E-Value=0.057)
          Length = 190

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 4  IKPNPAKALLRNEIAAKIA--ALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENE 61
          IK NP+  +++   A  +   A T  +++  ++ ++      +   S   +   +++E++
Sbjct: 2  IKFNPSPLMVKTIKAHCLIDYAATQNKQEAVAESLFHHFFELAHNISREDVLQQVASESD 61

Query: 62 IDTAPLIKHIQARGAAAFV 80
          +DT+  I HIQ  G AA V
Sbjct: 62 LDTSAAIMHIQDLGVAARV 80


>SB_29143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 101 MPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSRSG 140
           +PK K   S+  K+Q R +A+  G    I+ P  A  ++G
Sbjct: 32  LPKLKFLDSRTVKEQERQEAMRVGAFMKIVTPSTATVKTG 71


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 104  TKH-GISQHGKDQARDDALETGGLDLII 130
            T+H  I Q GK+Q  DDAL   GL L +
Sbjct: 1963 TQHRDIQQRGKEQNSDDALSNQGLPLSV 1990


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,555,625
Number of Sequences: 59808
Number of extensions: 262725
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 11
length of query: 196
length of database: 16,821,457
effective HSP length: 78
effective length of query: 118
effective length of database: 12,156,433
effective search space: 1434459094
effective search space used: 1434459094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)