Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
(196 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032656-2|CAA21728.1| 206|Caenorhabditis elegans Hypothetical ... 137 6e-33
U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein. 31 0.54
AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeri... 31 0.54
AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying de... 31 0.54
AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying de... 31 0.54
AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical... 28 5.1
AL132948-27|CAD31825.1| 1434|Caenorhabditis elegans Hypothetical... 27 6.7
AC024751-1|ABF71719.1| 261|Caenorhabditis elegans Hypothetical ... 27 6.7
>AL032656-2|CAA21728.1| 206|Caenorhabditis elegans Hypothetical
protein Y106G6E.4 protein.
Length = 206
Score = 137 bits (331), Expect = 6e-33
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 6/198 (3%)
Query: 1 MSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTEN 60
MS IK K+ LR + + ++ EE +RQ++ V+EK+I W++ S R+++Y+ST
Sbjct: 1 MSAIKE--VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG 58
Query: 61 EIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLETGDE---QTMPKTKHGISQHGKDQAR 117
EI T +I+ G F+PQ+ G M + D+ +P T GI Q
Sbjct: 59 EIQTDSIIQKALEMGKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEPKWKW 118
Query: 118 DDALETGGLDLIIAPGVAFSRSGDRLGHGGGYYDKFI-TNLRLNPETAPKIVAVAFNCQV 176
ETG LDLI+APGVAFS G R GHG GYYD+F T+ + PE +PK + +A Q+
Sbjct: 119 QSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENSPKKIGLALREQI 178
Query: 177 VDEVPTNEQDQKVDEVIF 194
+ +P +E D ++DEVI+
Sbjct: 179 IGTIPISETDVELDEVIY 196
>U56864-1|AAB04059.1| 355|Caenorhabditis elegans EGL-30 protein.
Length = 355
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 26 NEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAG 85
NE + +S+ ++ +I + W+ +SS + L+++ ++ ++ L H+ A + P+Y G
Sbjct: 240 NENRMEESKALFRTIITYPWFTNSS-VILFLNKKDLLEEKILYSHL-----ADYFPEYDG 293
>AY008139-1|AAG32092.1| 355|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 355
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 26 NEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAG 85
NE + +S+ ++ +I + W+ +SS + L+++ ++ ++ L H+ A + P+Y G
Sbjct: 240 NENRMEESKALFRTIITYPWFTNSS-VILFLNKKDLLEEKILYSHL-----ADYFPEYDG 293
>AF003739-2|AAM15593.1| 303|Caenorhabditis elegans Egg laying
defective protein 30,isoform b protein.
Length = 303
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 26 NEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAG 85
NE + +S+ ++ +I + W+ +SS + L+++ ++ ++ L H+ A + P+Y G
Sbjct: 188 NENRMEESKALFRTIITYPWFTNSS-VILFLNKKDLLEEKILYSHL-----ADYFPEYDG 241
>AF003739-1|AAB58071.1| 355|Caenorhabditis elegans Egg laying
defective protein 30,isoform a protein.
Length = 355
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 26 NEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAG 85
NE + +S+ ++ +I + W+ +SS + L+++ ++ ++ L H+ A + P+Y G
Sbjct: 240 NENRMEESKALFRTIITYPWFTNSS-VILFLNKKDLLEEKILYSHL-----ADYFPEYDG 293
>AL032632-10|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 14 RNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPLIKHI 71
RN +I L NE+ K + +I ++ N K + ++++ + E ++ ++ +
Sbjct: 823 RNRDKERIEELENEKLKLEEEIQEMEIKNEEALKENLKLSMLLDREKSEKVKVQKELEEV 882
Query: 72 QARGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDAL 121
+ +G + + R M +E +E + QH K +D L
Sbjct: 883 EKQGREKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKKVMKMNDVL 932
>AL132948-27|CAD31825.1| 1434|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1434
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 14 RNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENEIDTAPLIKHIQA 73
+ E+ + L N EK+++ + + EK I YK R A + +T E A I
Sbjct: 1061 QKEMDNEAEKLLNVEKEKEKRKIIEKWIMSKDYKDDQRTAKFCNTTIESVNASTIDKDHI 1120
Query: 74 RGAAAFVPQ 82
+ ++P+
Sbjct: 1121 TESYTYLPE 1129
>AC024751-1|ABF71719.1| 261|Caenorhabditis elegans Hypothetical
protein Y18H1A.14 protein.
Length = 261
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 4 IKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKS 48
I P PA +RN KI L N+EK Y + +S YK+
Sbjct: 43 IHPLPALRRVRNSYTNKIKELDNDEKDLFFVSAYYYGVGYSLYKN 87
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,979,438
Number of Sequences: 27539
Number of extensions: 205658
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 8
length of query: 196
length of database: 12,573,161
effective HSP length: 78
effective length of query: 118
effective length of database: 10,425,119
effective search space: 1230164042
effective search space used: 1230164042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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