GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
         (196 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.8  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 108 ISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGY 149
           +S+ G+++AR   + T  L   + PGVA +  GD +G    Y
Sbjct: 353 VSRFGEEKAR--MITTMSL---LLPGVAVNYYGDEIGMSDTY 389


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 108 ISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGY 149
           +S+ G+++AR   + T  L   + PGVA +  GD +G    Y
Sbjct: 353 VSRFGEEKAR--MITTMSL---LLPGVAVNYYGDEIGMSDTY 389


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 105 KHGISQHGKDQARDDALETGGLD 127
           KH     G D+ RD A+++G  D
Sbjct: 44  KHIDFDFGSDERRDAAIKSGEFD 66


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 24  LTNEEKKRQSQIVYEKVINHS 44
           LT E KK+  +++ + V NH+
Sbjct: 103 LTAEAKKQNLKVILDLVPNHT 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,561
Number of Sequences: 429
Number of extensions: 2296
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 196
length of database: 140,377
effective HSP length: 55
effective length of query: 141
effective length of database: 116,782
effective search space: 16466262
effective search space used: 16466262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)