Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002071-TA|BGIBMGA002071-PA|IPR002698|5-
formyltetrahydrofolate cyclo-ligase
(196 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase (... 77 6e-15
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 37 0.010
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 32 0.22
At2g03500.1 68415.m00309 myb family transcription factor contain... 31 0.68
At2g24950.1 68415.m02984 hypothetical protein contains Pfam pr... 29 1.6
At2g35710.3 68415.m04381 glycogenin glucosyltransferase (glycoge... 27 8.4
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge... 27 8.4
>At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase
(5-FCL) nearly identical to gi:22087553
Length = 277
Score = 77.4 bits (182), Expect = 6e-15
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 22/204 (10%)
Query: 10 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 67
K ++R+ + + A+ + +Q + + + V+ W+KS + Y+S + NE+DT+ +
Sbjct: 60 KRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWFKSCKGLCAYISCKSLNEVDTSKI 119
Query: 68 IKHIQARGAA-----AFVP--QYAGGRMRMLHLETGDEQTMPKTK----HGISQHGKDQA 116
+ I + +VP + MRMLH+ ++ + G D
Sbjct: 120 LSEILQHPDSNTQKKLYVPWVEDKNSNMRMLHISHMEDLVANSMNILEPAPVDAQGND-- 177
Query: 117 RDDALETGG-LDLIIAPGVAFSRSGDRLGHGGGYYDKFITNLRLNPETA----PKIVAVA 171
R+D L+ +DL I PG+AF R G RLG GGGYYD F+ + + P +VA++
Sbjct: 178 REDVLQADEPIDLFILPGLAFDRCGRRLGRGGGYYDTFLKRYQDRAKEKGWRYPLMVALS 237
Query: 172 FNCQVVDE--VPTNEQDQKVDEVI 193
++ Q++++ +P D +D ++
Sbjct: 238 YSPQILEDGSIPVTPNDVLIDALV 261
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 104 TKHGISQHGKDQARDDALETGGLDLIIAPGVAFS-RSGDRLGHGGGYYDKFITNLRLNP- 161
T G++++G+ D+ ++ +DLI+ VA + ++G RLG G G+ + LR
Sbjct: 196 TSVGVAKYGRAIGLDEKIK---VDLIVIGSVAVNPQTGARLGKGEGFAELEYGMLRYMGA 252
Query: 162 -ETAPKIVAVAFNCQVVDEVP 181
+ + +V +CQ+VD++P
Sbjct: 253 IDDSTPVVTTVHDCQLVDDIP 273
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 106 HGISQHGKDQARDDALETGGLDLIIAPGVAFSRSGDRLGHGGGYY 150
HG HG + GG+ IIA GVA + + H G+Y
Sbjct: 83 HGYPSHGYPRPSHSGHHHGGIGAIIAGGVAAAAGAHHMSHHHGHY 127
>At2g03500.1 68415.m00309 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 432
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 59 ENEIDTAPLIKHIQAR---GAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKDQ 115
++EI+++P + H A+ G+ AF+P + L L T ++ P +H Q G D+
Sbjct: 142 KDEINSSPKLGHFDAKQRNGSGAFLPFSKEQSLPELALSTEVKRVSPTNEHTNGQDGNDE 201
Query: 116 A 116
+
Sbjct: 202 S 202
>At2g24950.1 68415.m02984 hypothetical protein contains Pfam
profile PF03080: Arabidopsis proteins of unknown
function
Length = 411
Score = 29.5 bits (63), Expect = 1.6
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 99 QTMPKTKHGISQHGKDQARDDALETGGLDLIIAPGVAFSR-SGDRLGHGGGYYDKFITNL 157
+TM ++ G+ ++ ++ D L+ GG ++ P F S + + GG Y F+ +
Sbjct: 283 RTMVSSEFGLLKNKENG--DWWLKLGGQEIGYWPAKKFKETSANNIEWGGEVYSAFLPSP 340
Query: 158 RLN----PETAPKIVAVAFNCQVVDE 179
++ PET + A+ FN +VDE
Sbjct: 341 QMRNDHFPETHIEYDAIIFNITIVDE 366
>At2g35710.3 68415.m04381 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2
from Homo sapiens [SP|O15488]
Length = 115
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 40 VINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLET 95
+I + Y+ + L E IDTA + +Q RG P++ M+++ T
Sbjct: 18 IIETTAYRERQLLLLQPPQETAIDTANAVVTVQDRGLKTRRPEHKNAYATMMYMGT 73
>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2
from Homo sapiens [SP|O15488]
Length = 497
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 40 VINHSWYKSSSRIALYMSTENEIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLET 95
+I + Y+ + L E IDTA + +Q RG P++ M+++ T
Sbjct: 18 IIETTAYRERQLLLLQPPQETAIDTANAVVTVQDRGLKTRRPEHKNAYATMMYMGT 73
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,755,988
Number of Sequences: 28952
Number of extensions: 194601
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 7
length of query: 196
length of database: 12,070,560
effective HSP length: 77
effective length of query: 119
effective length of database: 9,841,256
effective search space: 1171109464
effective search space used: 1171109464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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