GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002070-TA|BGIBMGA002070-PA|IPR001245|Tyrosine protein
kinase, IPR011009|Protein kinase-like, IPR000719|Protein kinase
         (877 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    38   4e-04
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.97 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.97 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 4   PPGCPAPVYELMRGCWQWSPSERPSFREIHHALEHMFQD 42
           P  C   +Y +M  CW+  P  RP+F E+  +LE + ++
Sbjct: 716 PANCSPDLYAVMLNCWKECPKNRPTFTELSKSLEGLLEN 754


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 428 DPVTRLVSELSESLNMEALRRVDRKLDSAKTEDGKESVSPIDLKASLRKTAYGNNAEQK 486
           +P      +L + L+M+  +  D+ LD +KT++     S ++    LRK    N  E K
Sbjct: 285 EPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETK 343


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 428 DPVTRLVSELSESLNMEALRRVDRKLDSAKTEDGKESVSPIDLKASLRKTAYGNNAEQK 486
           +P      +L + L+M+  +  D+ LD +KT++     S ++    LRK    N  E K
Sbjct: 177 EPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDETK 235


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 554 DEKEAIKKDISKTEELDRYRSESGSLDTSGGDEEDKRRSTGSISSLKKLWESKETEERLS 613
           D +  +KK++ + E L+ + S     +    DE++  RS  S  + ++  +        S
Sbjct: 861 DGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDE--RSFHSNGAKEEDEDKPSVSPLTS 918

Query: 614 PKMRARDNESDEVSPEERSCAARGAGRRDDKPSVPSKPVGVRKP 657
           P+  A   E+   SP    C    +    D+   P    G RKP
Sbjct: 919 PRQPA---ETHAGSP----CRNSASPASSDRSGTPRSTNGDRKP 955


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,482
Number of Sequences: 317
Number of extensions: 5782
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 877
length of database: 114,650
effective HSP length: 63
effective length of query: 814
effective length of database: 94,679
effective search space: 77068706
effective search space used: 77068706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)