GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002069-TA|BGIBMGA002069-PA|IPR001452|Src homology-3,
IPR000980|SH2 motif, IPR001245|Tyrosine protein kinase,
IPR011009|Protein kinase-like, IPR000719|Protein kinase,
IPR008266|Tyrosine protein kinase, active site, IPR001720|PI3 kinase,
P85 regulatory subunit
         (473 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   123   2e-30
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    23   4.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  123 bits (297), Expect = 2e-30
 Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 1/115 (0%)

Query: 349 LMYMATQIASGMSYLESRSFIHRDLAARNCLVGENHLVKVADFGLAR-LMRDDTYTAHAG 407
           L+ +A Q+A GM +L     +HRDLAARN LV ENH VKV+DFGL+R + +D+ Y  + G
Sbjct: 594 LLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGG 653

Query: 408 AKFPIKWTAPEGLAYNTFSTKSDVWAFGILLWEIATYGMSPYPGVDLADVYHMLE 462
            K P++W A E L +  ++T SDVW+FG+LLWEI T G +PY GV  +++   L+
Sbjct: 654 GKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFLK 708



 Score = 57.2 bits (132), Expect = 2e-10
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 17/169 (10%)

Query: 231 KPTVFPLAPPDHWEIDRTDIVMKHKLGGGQYGDVYEAAW--KRGNIT-VAVKTLKDDTMA 287
           KP +F     D WE+    +  +  +G G +G V  A    K  N T VAVK LK+   +
Sbjct: 437 KPDIF-----DQWELGPLKLSFQGVIGEGAFGIVRRAFLDLKEDNKTQVAVKMLKESPTS 491

Query: 288 --LKDFLEEASIMKEMR-HPNLVQLLGVCTR---EPPFYIITEFMSRGNLLEYLRAGARE 341
             ++ F +E +IMK +R HP +V L+G  T    E P  ++ E+ SRG+L  YLR    +
Sbjct: 492 EEIRQFTQEINIMKSVRQHPYIVSLIGCVTEGRAEGPLLVV-EYCSRGDLQTYLRTAWDK 550

Query: 342 CVPGAVVLMYMATQIASGMSYLESRSFIHRDLAARN-CLVGENHLVKVA 389
                    Y+  + ++  +Y  ++++   +++  N  ++   HL+ +A
Sbjct: 551 FTNMQQQFAYI-DESSNSSNYFANKTYDFHNMSFENDFIIQPKHLLSIA 598


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 345 GAVVLMYMATQIASGMSYLESRSFIHRDLAARNCLVGENHLVKVADF 391
           G +V M   T+   GM   +   F+H  +A R  +  +N   K+ DF
Sbjct: 310 GMIVEMMRKTE-TPGMPN-DFEEFVHPTVAKRGSITSKNVAKKIRDF 354


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,532
Number of Sequences: 317
Number of extensions: 4512
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 473
length of database: 114,650
effective HSP length: 59
effective length of query: 414
effective length of database: 95,947
effective search space: 39722058
effective search space used: 39722058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)