GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002068-TA|BGIBMGA002068-PA|undefined
         (56 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   3.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    18   6.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 36  NIFTEHSVFVFRALGFEILLQ 56
           NIF  +  ++F     +I++Q
Sbjct: 384 NIFASYFAYIFGKFACKIMIQ 404


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 36  NIFTEHSVFVFRALGFEILLQ 56
           NIF  +  ++F     +I++Q
Sbjct: 384 NIFASYFAYIFGKFACKIMIQ 404


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 36  NIFTEHSVFVFRALGFEILLQ 56
           NIF  +  ++F     +I++Q
Sbjct: 384 NIFASYFAYIFGKFACKIMIQ 404


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 36  NIFTEHSVFVFRALGFEILLQ 56
           NIF  +  ++F     +I++Q
Sbjct: 384 NIFASYFAYIFGKFACKIMIQ 404


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
          protein.
          Length = 126

 Score = 18.2 bits (35), Expect = 6.9
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 21 RSKPRVPKDPRMLGSNI 37
          R  PR P  P+++   +
Sbjct: 58 RGPPRTPLQPKLVAGKL 74


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9781
Number of Sequences: 317
Number of extensions: 251
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 114,650
effective HSP length: 36
effective length of query: 20
effective length of database: 103,238
effective search space:  2064760
effective search space used:  2064760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)