GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002068-TA|BGIBMGA002068-PA|undefined
         (56 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0250 + 16074966-16075418                                         27   2.6  
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432...    26   3.4  
07_03_0864 - 22115997-22116056,22116293-22116505,22116863-221172...    26   3.4  
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    25   5.9  
06_03_1242 - 28618752-28618980,28619457-28619797                       25   7.8  

>09_04_0250 + 16074966-16075418
          Length = 150

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 7  KERGTASGASMRSARSKPRVPKDPRMLGSNIF 38
          K+RGTA+GA     RS P  P     +GS+++
Sbjct: 35 KKRGTAAGAGTSRPRSTP-TPVRAESVGSSVY 65


>09_03_0079 +
           12142390-12142459,12142792-12143006,12143050-12143268,
           12143345-12143932
          Length = 363

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 6   AKERGTA-SGASMRSARSKPRVPKDPRMLGSN 36
           A ERG   +GA  R AR + R P+ P + G +
Sbjct: 291 ALERGEGGAGADRRDARGRRRAPRQPGVRGQD 322


>07_03_0864 -
           22115997-22116056,22116293-22116505,22116863-22117291,
           22117407-22117508,22117599-22117691,22117802-22117996
          Length = 363

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 3   AQQAKERGTASGASMRSARSKPRVPKDPRMLGSNIFTEHSVFVFRAL 49
           A    ER T  G++  SA +K R    PR  G++       ++ RA+
Sbjct: 313 ASSESERTTTVGSAANSADAKRRCMGPPRQWGASFVFVQKYWMLRAM 359


>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 28  KDPRMLGSNIFTEHSVFVFRALGFEIL 54
           KD  + G  I  EH+ FV   LGF+++
Sbjct: 478 KDKDLSGIMISVEHAAFVAEELGFDMV 504


>06_03_1242 - 28618752-28618980,28619457-28619797
          Length = 189

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 3   AQQAKERGTASGASMRSA-RSKPRVPKDPRMLGS 35
           A  AK  G   G + RSA RS PR P  PR+  S
Sbjct: 81  AMAAKSGGRVGGQAFRSAPRSAPR-PSGPRINNS 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,353
Number of Sequences: 37544
Number of extensions: 35126
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 14,793,348
effective HSP length: 36
effective length of query: 20
effective length of database: 13,441,764
effective search space: 268835280
effective search space used: 268835280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)