GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002068-TA|BGIBMGA002068-PA|undefined
         (56 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35601-2|CAA84666.1|  259|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z12017-9|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z12017-7|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z12017-6|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical ...    25   8.4  
AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical...    25   8.4  
AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein...    25   8.4  

>Z35601-2|CAA84666.1|  259|Caenorhabditis elegans Hypothetical
           protein R10E9.2 protein.
          Length = 259

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 2   GAQQAKERGTASGASMRSARSKPRVPK 28
           G ++ KE+ +  GAS RS+RS  +  K
Sbjct: 197 GEEEQKEKKSIRGASRRSSRSSKKSAK 223


>Z12017-9|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 30  PRMLGSNIFTEHSVFVFRALGFEIL 54
           PR +G N F   S+  F  LGF +L
Sbjct: 370 PRSVGENHFHRASMMFFEDLGFSML 394


>Z12017-7|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 30  PRMLGSNIFTEHSVFVFRALGFEIL 54
           PR +G N F   S+  F  LGF +L
Sbjct: 373 PRSVGENHFHRASMMFFEDLGFSML 397


>Z12017-6|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 30  PRMLGSNIFTEHSVFVFRALGFEIL 54
           PR +G N F   S+  F  LGF +L
Sbjct: 373 PRSVGENHFHRASMMFFEDLGFSML 397


>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 14  GASMRSARSKPRVPKDPR 31
           GAS R A+S+   P+DPR
Sbjct: 257 GASSRGAQSRGSPPRDPR 274


>AL110501-9|CAB54507.2|  802|Caenorhabditis elegans Hypothetical
          protein Y79H2A.11 protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8  ERGTASGASMRSARSKPRVPK 28
          E G + GASM  A + PRV K
Sbjct: 26 EAGGSDGASMNGANTLPRVSK 46


>AL033514-40|CAD36501.1|  802|Caenorhabditis elegans Hypothetical
          protein Y79H2A.11 protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8  ERGTASGASMRSARSKPRVPK 28
          E G + GASM  A + PRV K
Sbjct: 26 EAGGSDGASMNGANTLPRVSK 46


>AJ319870-1|CAC67459.1|  802|Caenorhabditis elegans ZYG-8 protein
          protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 8  ERGTASGASMRSARSKPRVPK 28
          E G + GASM  A + PRV K
Sbjct: 26 EAGGSDGASMNGANTLPRVSK 46


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,084,291
Number of Sequences: 27539
Number of extensions: 26147
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 8
length of query: 56
length of database: 12,573,161
effective HSP length: 37
effective length of query: 19
effective length of database: 11,554,218
effective search space: 219530142
effective search space used: 219530142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)