GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002068-TA|BGIBMGA002068-PA|undefined
         (56 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   2.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   8.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 25  RVPKDPRMLGSNIFTEHSVFV 45
           R   DPRM+ +  +TE ++ +
Sbjct: 281 RTNSDPRMILTEAYTEFNLTI 301


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 10  GTASGASMRSARSKPRVPKDPRMLGSNIFTEH 41
           G A+G S RS+ S        +   +N +T H
Sbjct: 95  GDATGLSNRSSTSSNDPKNQYKNQNNNHYTSH 126


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 13  SGASMRSARSKPRVPKDP 30
           S +S RSA S   V  DP
Sbjct: 449 SSSSSRSAESPMSVQVDP 466


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,274
Number of Sequences: 429
Number of extensions: 280
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 56
length of database: 140,377
effective HSP length: 36
effective length of query: 20
effective length of database: 124,933
effective search space:  2498660
effective search space used:  2498660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)