Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002067-TA|BGIBMGA002067-PA|IPR007965|Protein of unknown
function DUF738
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.1  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   9.4  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 108 KDTESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNNNFAV 148
           KDT  D+       P H   + LK+N GVE L     N  V
Sbjct: 637 KDTVFDIIKQVETDPDHLKFKILKKNLGVEYLESYGLNIRV 677


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 233 GPVPTRPSQLEMEEACAALFDEPSPAGSSTSRRDSQLTD 271
           G   T+P+ +   E  AA   +P+PA  +T+  +++  D
Sbjct: 579 GSATTKPTPVSATEEHAAGTTKPAPAAGATATAENETAD 617


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 120 DGPSHK-MEQFLKRNYGVERLVRQNNNFAVSPKFFTF 155
           D   HK ++ F   NY  E+L+ Q  N   S  FF +
Sbjct: 177 DPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAY 213


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,405
Number of Sequences: 5004
Number of extensions: 53513
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 3
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)