GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002067-TA|BGIBMGA002067-PA|IPR007965|Protein of unknown
function DUF738
         (285 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    98   7e-21
U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    95   7e-20
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    28   6.6  

>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 2   LQDSLS-KLIDVLGEYSSAAQGLNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAVGML 60
           LQD +  + ID L + S+    L   +TT EKL +     +Y+    D +      +G  
Sbjct: 26  LQDPIVYEAIDNLAKLSAHCLQLRTPLTTCEKL-INSDSTLYLSWKYDEEEKVSRLMGFA 84

Query: 61  KIGRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAID 120
           K+GRK LFL+D + Q  E E LC+LDFYV  + QR G G+++ D+M     ++ + LA+D
Sbjct: 85  KVGRKKLFLYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQQILDYMFSQEHTEPYQLALD 144

Query: 121 GPSHKMEQFLKRNYGVERLVRQNNNFAVSPKFFTFTTAE 159
            PS  +  F+ + YG+ + V QN NF V  + F   +AE
Sbjct: 145 NPSVTLLGFMSQKYGLIKPVWQNTNFVVFEELFLALSAE 183


>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 4/151 (2%)

Query: 5   SLSKLIDVLGEYSSAAQGLNRVITTGEKL-RLCPSHVVYILKDKDAKNGEGEAV-GMLKI 62
           ++++ ID LGE SS   G  RVIT  +K+         YI+ +K   NG    + G+L++
Sbjct: 33  AVAQSIDCLGEMSSKFHGWKRVITMYDKIVDHDEEQTTYIMWEK--VNGSKSILKGLLRV 90

Query: 63  GRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGP 122
           G K L+L D+++     + +C+LDF+VV   QR+G G K+FD MLK     V   A D P
Sbjct: 91  GYKTLYLTDNEQNQYMEKAMCILDFFVVPTEQRSGNGFKMFDEMLKAENVTVDQCAFDKP 150

Query: 123 SHKMEQFLKRNYGVERLVRQNNNFAVSPKFF 153
           S  ++QFL++ Y  + LV Q+N +A+   FF
Sbjct: 151 SAALQQFLEKYYDRKDLVWQSNKYALCSNFF 181


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 139 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 187
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 694 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 742


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 139 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 187
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 699 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 747


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 139 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 187
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 694 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 742


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 139 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 187
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 699 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 747


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 23  LNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAVGMLKIGRKHLFLFDDKEQVR--ELE 80
           L+++ +  E L  C   ++  +++ + KNG+ +     K         D KE+    E+E
Sbjct: 7   LSQLRSNAENLSRCLHVLLEKIENIEKKNGKEQDADSTKSNGTSSSNKDGKEKFEQVEIE 66

Query: 81  PLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGPSHKMEQFLK 131
               +D        +TG  K+        T    HALA+DGPS  M   L+
Sbjct: 67  EKTEID-------PKTGLKKRTIVTERVLTTKTFHALALDGPSPTMTPILR 110


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,034,591
Number of Sequences: 27539
Number of extensions: 307516
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 7
length of query: 285
length of database: 12,573,161
effective HSP length: 81
effective length of query: 204
effective length of database: 10,342,502
effective search space: 2109870408
effective search space used: 2109870408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)