GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002066-TA|BGIBMGA002066-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566     33   1.1  
06_03_1105 - 27634787-27636025                                         32   1.9  
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659...    31   2.5  
03_02_0392 - 8070342-8071628                                           31   3.3  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    31   3.3  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    30   5.7  
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    30   7.6  

>09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566
          Length = 122

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 523 PDDIYNNPIPSTSSEGAVPPR-PEHRPLDTLSEAHTDEDGGPSP 565
           PD  YNNP+P    E   PP  P H     LS   + +D    P
Sbjct: 34  PDSSYNNPVPGNEDEAREPPLVPPHLQHTLLSFPPSQDDSSSLP 77


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 414 ASSANCTLRVRVEPGGALIVRRVPAGINIGPVVAGVIGARKPQYDIWGNAVNVASR 469
           +SS+ CTL    +P    + R   +G+ + PVV  V    +P +  + +  + A++
Sbjct: 326 SSSSPCTLHAAAKPRSRAVDRSYSSGVRVAPVVLNVPVCSRPVFGFFKDKKDAAAK 381


>06_02_0038 +
           10865068-10865150,10865249-10865335,10865835-10865936,
           10867000-10870078
          Length = 1116

 Score = 31.5 bits (68), Expect = 2.5
 Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 6/89 (6%)

Query: 25  KVYFSCSLVVYTAVLIVQLLAFN--MTPIGIATMILCGIIVVSVTYLIFAIDLKFAGGKL 82
           +++F  +   + A L V LL  N  +   G+ +  L   ++V +  L+ A    FA G  
Sbjct: 817 RIFFYFNATAFMASLAVILLLVNKRLCDKGLKSYALRACVLVDLISLMGA----FAAGSC 872

Query: 83  KRISKRVHNNRTLAQLMSFIVVGAVILQI 111
           +R+S  ++    +A + +++++  ++LQ+
Sbjct: 873 RRVSTSIYVILVVAAVFAYVMIQILVLQV 901


>03_02_0392 - 8070342-8071628
          Length = 428

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 539 AVPPRPEHRPLDTLSEAHTDEDGGPSPRASIPMVNT 574
           A PPRP  RP  T + A   +DG  S RA  P   T
Sbjct: 14  ARPPRPASRPAATAAAAAASDDGEYSARAPAPQFVT 49


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 520 DSIPDDIY-----NNPIPSTSSEGAVPPRPEHRPLDTLSEAHTDEDGGPSPRAS 568
           D +PDD +     ++P PSTS+     P P   P  TL  +       PSP +S
Sbjct: 15  DDLPDDFFLSASISSPSPSTSTPPPPSPIPSTSPRPTLRSSSLPPASTPSPSSS 68


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 490 SARGYKLRCRGTVDVKGKGNMVTYFLEGVGDSIPDDIYNNPIPSTSSEGAVPPRPEHRPL 549
           + RGY+L+  G+    G+GN  T   EG+   + + +     P+T+ +   P       +
Sbjct: 171 TGRGYELKREGS----GRGNWGTVTDEGLAQEVAEAVNTEEAPATAEDEKKPEDVPQSEV 226

Query: 550 DTLSEAHTDEDGGPSP 565
           D   E+  +E+    P
Sbjct: 227 DKDKESPENEEEEKEP 242


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 490 SARGYKLRCRGTVDVKGKGNMVTYFLE---GVGDSIPDDIYNNPIPSTSSEGAVPPRP 544
           +A   ++RC G   V   G  +T F+    G+   +P  +   P PS+SS  A  P P
Sbjct: 10  AAAPIQVRCAGCRGVLAVGPGMTEFICPKCGMAQRLPPQLMPKPPPSSSSSAAATPAP 67


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,422,597
Number of Sequences: 37544
Number of extensions: 769111
Number of successful extensions: 1954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1951
Number of HSP's gapped (non-prelim): 8
length of query: 731
length of database: 14,793,348
effective HSP length: 87
effective length of query: 644
effective length of database: 11,527,020
effective search space: 7423400880
effective search space used: 7423400880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)