Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002065-TA|BGIBMGA002065-PA|IPR009398|Adenylate
cyclase-like
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1244 + 32033492-32033641,32035144-32035200,32035283-320353...    28   0.82 
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857...    26   3.3  
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    25   5.8  
05_04_0369 - 20691100-20691235,20691318-20691488,20691540-206919...    25   5.8  

>04_04_1244 +
          32033492-32033641,32035144-32035200,32035283-32035384,
          32035716-32035781,32035900-32036001,32036396-32036431
          Length = 170

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 2  GADAGADNKKPEDEVNEYLMKAID--ARSIDRLRAEHCRPFTLTFRDAHLERKVRGRLRY 59
          G +AGA     +DE+ + + + +D  AR  DRL  +  R  T       LE      L+ 
Sbjct: 11 GVEAGAAGGGKDDELADLVRRLVDALARYSDRLPFDLDRQVTCRLLGVILEETTPEELQN 70

Query: 60 HIT 62
          H+T
Sbjct: 71 HVT 73


>04_02_0017 -
           8572400-8572732,8572818-8572919,8573138-8573230,
           8573391-8573519,8573781-8574025,8574184-8574453,
           8574590-8574752,8575965-8576063
          Length = 477

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 39  PFTLTFRDAHLERKVRGRLRYHITT 63
           PF L  R++ L +  R +++YH TT
Sbjct: 297 PFPLHLRNSELNKTNRSKVKYHHTT 321


>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 13  EDEVNEYLMKAIDARSIDRLRAEHCRPFTLTFRDAHLERKVRGRLR 58
           E+E++     A+DA S++R +A H R      +   LE K+  ++R
Sbjct: 239 EEELDSSAFYAMDAVSVERDKAAHDRENWNRGKICKLESKLASKIR 284


>05_04_0369 -
           20691100-20691235,20691318-20691488,20691540-20691940,
           20692084-20692452,20692540-20692986,20693065-20693772
          Length = 743

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 45  RDAHLERKVRGRLRYHITT 63
           +DAHLE K+R  +R  +T+
Sbjct: 302 KDAHLEAKIRASIRAELTS 320


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,046
Number of Sequences: 37544
Number of extensions: 69806
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)