Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002064-TA|BGIBMGA002064-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   7.0  

>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 184 LTVSTGACSLFTYVTYAT-LPVRLHEATIGGLAL---AAVNIGAHLLLDNSSDMQLYCTI 239
           L +  G+ +L  ++   T +PV  H A +  + +   A + + + L+LD  +D    C  
Sbjct: 200 LVIPRGSTNLVRHIKDNTKIPVLGHAAGLCSMYVHEDADMELASKLVLDGKTDYPAACNA 259

Query: 240 ATLIACNAAGMLTHQPR 256
              +  N A + +H P+
Sbjct: 260 IETLLINEAVLSSHLPK 276


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,241
Number of Sequences: 5004
Number of extensions: 88512
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 1
length of query: 566
length of database: 2,362,478
effective HSP length: 76
effective length of query: 490
effective length of database: 1,982,174
effective search space: 971265260
effective search space used: 971265260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)