GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002064-TA|BGIBMGA002064-PA|IPR001054|Adenylyl cyclase
class-3/4/guanylyl cyclase
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0998 - 29996117-29996242,29996345-29996486,29996613-299968...    31   3.2  
01_06_1359 - 36645892-36646031,36646625-36646836,36647411-366475...    29   7.5  
11_04_0397 - 17230152-17231453                                         29   9.9  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    29   9.9  
03_05_0456 - 24498212-24499581,24502660-24503071                       29   9.9  

>04_04_0998 -
           29996117-29996242,29996345-29996486,29996613-29996812,
           29997112-29997497,29997769-29998318,29998949-29999296
          Length = 583

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 327 LFADICGFTSLSDQCTAEELVRLLNE-LFARFDRLAAEHHCLRIKLLGDCYYCVSGLPEA 385
           +F  +C  T  +       L RLL E  F R+DRL  E     +  +  C  CV G  E 
Sbjct: 330 VFQLVCPDTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLED 389

Query: 386 RDDHAKC 392
            D++A+C
Sbjct: 390 EDNNAQC 396


>01_06_1359 -
           36645892-36646031,36646625-36646836,36647411-36647594,
           36647720-36647795
          Length = 203

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 104 QSFDDTDPSHYKRIYYEKERVAHIINVI--VLGLSALVFACLLACLSRPAMNEIY 156
           Q F++        ++Y+   V  +I+++  V  L  LV+ACL+  L+ PA+ + Y
Sbjct: 118 QGFENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKY 172


>11_04_0397 - 17230152-17231453
          Length = 433

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 175 FAGTSVLRSLTVSTGACSLFTYVTYATLPVRLHEATIGGLALAAVNIGA-HLLLDNSSDM 233
           F GT+++ SL +   ACSL  +  +  LP  +  A  G  A+  + +GA  LLL  S+  
Sbjct: 35  FFGTTIVLSLGLLHAACSL--HWAHRPLPRGVGTAAFGATAVLCLAVGAVSLLLSWSAAA 92

Query: 234 QLYCTIA 240
           ++  T A
Sbjct: 93  RMTATKA 99


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 177 GTSVLRSLTVSTGACSLFTYVTYATLPVRLHEA--TIGGLALAAVNI-GAHLLLDNSSDM 233
           GT V R++ +    C  F +V  ATL +RL  A   IGG  L    +       DN+ + 
Sbjct: 184 GTHVARNIQIKKPLCIQFFFVVDATLSLRLSFAYCQIGGGELPDDTVLTCSRGSDNALEF 243

Query: 234 QLYCTIATL-IACNAAGMLTHQPRELAQRRAFLE 266
              C IA L I       L H+   L      L+
Sbjct: 244 HSTCKIANLTIRAELGCCLLHRSGRLTIEECLLQ 277


>03_05_0456 - 24498212-24499581,24502660-24503071
          Length = 593

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 133 LGLSALVFACLLACLSRPAMNEI-YLLTISYVVLVAFLLI 171
           + ++ +   CLL+ LS  A +   Y+L++ +V ++AF+++
Sbjct: 207 IAVAVIAIICLLSVLSTKASSRFNYVLSVLHVAVIAFIIV 246


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,816
Number of Sequences: 37544
Number of extensions: 574844
Number of successful extensions: 1511
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 5
length of query: 566
length of database: 14,793,348
effective HSP length: 86
effective length of query: 480
effective length of database: 11,564,564
effective search space: 5550990720
effective search space used: 5550990720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)