GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002063-TA|BGIBMGA002063-PA|undefined
         (76 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    23   3.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   6.4  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    23   6.4  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   8.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    22   8.5  

>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 49  DTPAPKKSNWEVIEHFSSNRSTKSPS 74
           D   PKK N  V+E    N +T S S
Sbjct: 274 DDDEPKKDNQNVVEEKQINLTTSSDS 299


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)

Query: 53  PKKSNWEVIEHF 64
           PKK+N+E++E F
Sbjct: 264 PKKANFEILERF 275


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 646

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 51 PAPKKSNWEVIEHFSSNRSTKS 72
          P  +  NW VI H    +ST S
Sbjct: 54 PQNRVRNWAVIAHIDHGKSTLS 75


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 101

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 52 APKKSNWEVIEHFSSNRSTKSPST 75
          AP+     ++E   SNR TK+P +
Sbjct: 34 APQDDPMFLVEKLLSNRKTKNPES 57


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 50  TPAPKKSNWEVIEHFSSNRSTKS 72
           TP P   +++ +  F S R+T S
Sbjct: 481 TPLPNSMSFDSLNEFESERNTPS 503


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.119    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,055
Number of Sequences: 5004
Number of extensions: 2835
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 76
length of database: 2,362,478
effective HSP length: 56
effective length of query: 20
effective length of database: 2,082,254
effective search space: 41645080
effective search space used: 41645080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)