GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002063-TA|BGIBMGA002063-PA|undefined
         (76 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    25   7.8  

>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 53  PKKSNWEVIEHFSSNRSTKSPST 75
           PK++  E +EH+  NR T + ST
Sbjct: 292 PKRTQQEQLEHWQKNRRTLAYST 314


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.307    0.119    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,809
Number of Sequences: 37544
Number of extensions: 15734
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 1
length of query: 76
length of database: 14,793,348
effective HSP length: 55
effective length of query: 21
effective length of database: 12,728,428
effective search space: 267296988
effective search space used: 267296988
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 52 (25.0 bits)