GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002062-TA|BGIBMGA002062-PA|undefined
         (70 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0UAX9 Cluster: Putative uncharacterized protein; n=1; ...    36   0.21 
UniRef50_Q69SI8 Cluster: Putative uncharacterized protein P0689B...    30   8.0  

>UniRef50_A0UAX9 Cluster: Putative uncharacterized protein; n=1;
          Burkholderia multivorans ATCC 17616|Rep: Putative
          uncharacterized protein - Burkholderia multivorans ATCC
          17616
          Length = 95

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 22 KMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCDH 60
          +MR++ RS  G +++V      RHA GAS D+    CD+
Sbjct: 32 RMRVTTRSEGGSAIDVAYLDSIRHANGASFDSELSACDY 70


>UniRef50_Q69SI8 Cluster: Putative uncharacterized protein
           P0689B12.31; n=2; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0689B12.31 - Oryza sativa subsp. japonica (Rice)
          Length = 366

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 6   KRSFSSEGGATSKRDWKMRLSLRSRSG 32
           K  + S GG T++R W  RLS R RSG
Sbjct: 290 KEEYGSGGGCTARRSWP-RLSCRRRSG 315


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.322    0.130    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,327,305
Number of Sequences: 1657284
Number of extensions: 1748904
Number of successful extensions: 3825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3824
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 575,637,011
effective HSP length: 49
effective length of query: 21
effective length of database: 494,430,095
effective search space: 10383031995
effective search space used: 10383031995
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)