GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002062-TA|BGIBMGA002062-PA|undefined
         (70 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    29   0.075
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    24   2.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    22   8.6  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    22   8.6  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 29.1 bits (62), Expect = 0.075
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 21  WKMRLSLRSRS---GHSVEVTQFYDKRHAAGASIDTSRYMCDHTCRVIY 66
           W+MRL+  +R     H+ + T + D R  +    D  +Y CD   ++IY
Sbjct: 370 WEMRLTNSARVYFVDHNTKTTTWDDPRLPSALDQDVPQYKCDFRRKLIY 418


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 40 FYDKRHAAGASIDTSRYMCDHTCRVIYTIIQ 70
          F+DK  ++   I+    +C H    IY+I+Q
Sbjct: 41 FFDKALSSKNIIEIIGLLCIHVALFIYSIVQ 71


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 35  VEVTQFYDKRHAAGASIDTSRYMCDHTCRVIYTII 69
           V +T+FY      GAS D   +   + C  +  I+
Sbjct: 494 VFITEFYVSIFPIGASPDAGAFFQSYLCFPVVVIV 528


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 48  GASIDTSRYMCDHT 61
           GA+ D S Y+CD T
Sbjct: 794 GATFDASLYVCDGT 807


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.130    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,545
Number of Sequences: 5004
Number of extensions: 7286
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 2,362,478
effective HSP length: 50
effective length of query: 20
effective length of database: 2,112,278
effective search space: 42245560
effective search space used: 42245560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)