GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002062-TA|BGIBMGA002062-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410...    27   1.4  
02_05_1350 - 35850020-35850073,35850430-35850519,35850963-358509...    26   3.2  
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357...    26   4.3  
05_01_0339 + 2673862-2675637                                           25   7.5  
04_04_1419 - 33433463-33436009                                         25   7.5  
04_04_0935 - 29509135-29511732                                         25   7.5  
06_03_1219 - 28491185-28494415                                         25   9.9  
02_01_0207 + 1395420-1396184                                           25   9.9  

>02_05_0076 +
           25637752-25639062,25639221-25639297,25640962-25641095,
           25641178-25641242,25641431-25641482,25641912-25641994,
           25642128-25642221,25642332-25642861
          Length = 781

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 2   SLPIKRSFS--SEGGATSKRDWKMRLSLRSRSGHSVEVTQ 39
           S PI+RS S  S GGA  KR      SLRS +G  V  T+
Sbjct: 220 STPIERSSSGSSNGGARYKRRNSWLRSLRSAAGSMVTYTR 259


>02_05_1350 -
          35850020-35850073,35850430-35850519,35850963-35850987,
          35851390-35851430,35852089-35852108,35852999-35853113,
          35853114-35853259,35853535-35853586
          Length = 180

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 37 VTQFYDKRHAAGASIDTSRYMCDHTCRV 64
          +  FY K + AGA +   RY C+  C+V
Sbjct: 11 LVDFYPKGYCAGAVVQQCRYACE-LCQV 37


>02_03_0109 -
           15333228-15334793,15335255-15335392,15335496-15335771,
           15336357-15336422,15338140-15338487
          Length = 797

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 7   RSFSSEGGATSKRDWKMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCDHT 61
           R+  S GGA      +  LS+  RSG S + T+ +   H A A +     +  HT
Sbjct: 639 RALVSRGGAADAGS-ETALSVARRSGRSNKATEEWLLDHVARAHVLAGEELTKHT 692


>05_01_0339 + 2673862-2675637
          Length = 591

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 21  WKMRLSLRSRSGHSVEVTQFYDKRHAAGAS-IDTSRYMCDHTC 62
           W   ++  +R GH  EV Q ++   A GA   D +     H C
Sbjct: 393 WNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHAC 435


>04_04_1419 - 33433463-33436009
          Length = 848

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 41  YDKRHAAGASIDTSRYMCDHTCR 63
           +D  + AG S DT R +C   CR
Sbjct: 352 FDLNYTAGISFDTCRRLCLVDCR 374


>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 21  WKMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCDHT-CRVIYTI 68
           W M ++  S+SG   E      + H  G  +D++ Y    T C  ++++
Sbjct: 238 WNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 13  GGATSKRDWKMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCD 59
           GGA  + DW+ RL++   +   V       K H     I +S  + D
Sbjct: 881 GGAPQQLDWRARLNIARGASRGVLHIHERCKPHIVHRDIKSSNILLD 927


>02_01_0207 + 1395420-1396184
          Length = 254

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 21  WKMRLSLRSRSGHSVEVTQFYDKRHAAGASID 52
           W   L+   R G   EV Q YD+  A+G   D
Sbjct: 74  WTALLNAYGRHGMCKEVIQIYDRMVASGVRPD 105


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.130    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,538
Number of Sequences: 37544
Number of extensions: 52301
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)