GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002062-TA|BGIBMGA002062-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)          31   0.097
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   25   6.4  
SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)                25   8.5  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               25   8.5  

>SB_48645| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.17)
          Length = 373

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 5  IKRSFSSEGGATSKRDWKMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCD 59
          +K ++S  G   SK+  K+R S +SR G   E+ QF    +  G SI      CD
Sbjct: 29 LKDAWSLFGEGRSKKTLKLRTSSQSRRGKVFELPQFDPYFYTRGRSIPCRMAGCD 83


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 33 HSVEVTQFYDKRHAAGASIDTSRYMCDHTCRVIY 66
          H++ VT++    HA   ++  +RYM   TC  ++
Sbjct: 17 HTLHVTRYMS--HATRQTLHVTRYMSQATCHTLH 48


>SB_13725| Best HMM Match : zf-B_box (HMM E-Value=6e-14)
          Length = 594

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 45  HAAGASIDTSRYMCD 59
           HA+G  +D S +MCD
Sbjct: 105 HASGRCVDCSEFMCD 119


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 5    IKRSFSSEGGATSKRDWKMRLSLRSRSGHSVEVTQFYDKRHAAGASIDTSRYMCDHTCR 63
            +K   SSEG A +KR         + +GHS  +   Y +  A       S  +C+   R
Sbjct: 1457 VKERLSSEGAADAKRAHLADPGSNTMTGHSTLIKAHYPEDRARALDSHASP-ICEKRAR 1514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.130    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,656
Number of Sequences: 59808
Number of extensions: 62995
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 6
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)