GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002062-TA|BGIBMGA002062-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   2.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    19   7.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 2.5
 Identities = 6/21 (28%), Positives = 15/21 (71%)

Query: 50  SIDTSRYMCDHTCRVIYTIIQ 70
           +I ++ ++C+H  R IY +++
Sbjct: 372 NICSNGWICEHRWRQIYNMVR 392


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
          protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 5  IKRSFSSEGGATSKR 19
          IK+S+S E G  ++R
Sbjct: 16 IKKSYSIENGYPARR 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.130    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002
Number of Sequences: 429
Number of extensions: 484
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)