Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002061-TA|BGIBMGA002061-PA|IPR001969|Peptidase aspartic,
active site, IPR009007|Peptidase aspartic, catalytic,
IPR001995|Peptidase A2A, retrovirus, catalytic
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552...    53   2e-07
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494...    29   2.5  
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    28   4.4  
01_07_0137 - 41381294-41382433                                         28   4.4  

>02_01_0742 +
           5524149-5524214,5524609-5524641,5524750-5524880,
           5525174-5525282,5525406-5525522,5525896-5525961,
           5526314-5526376,5526459-5526503,5526690-5526751,
           5526974-5527067,5527375-5527467,5527561-5527630,
           5527816-5527892,5527976-5528033,5528135-5528166,
           5528245-5528376
          Length = 415

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 36  LAIKNEVNGTSCKLTLDTGASRTVTSFRIASRCFVDHTYNQVGTNLVTTTGQHISVRGEK 95
           L +  EVNG   K  +D+GA  T+ S   A RC +    +Q    +    GQ   +    
Sbjct: 198 LYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGVAIGVGQSEILGRIH 257

Query: 96  KVELKLGSEVYQHNAIVADIVD-DCIVGLDFMKTHSCEIDVRQGVLKCSPEEISM 149
              +K+G   Y  +  V D  + + + GLD ++ H C ID++  VL+    E+S+
Sbjct: 258 VAPIKIGHVFYPCSFTVLDAPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSV 312


>07_01_0659 +
           4946937-4946990,4947579-4947698,4947820-4947918,
           4948038-4948175,4948268-4948402,4948501-4948609,
           4948735-4948976,4949061-4949180,4949272-4949391,
           4949477-4949599,4949708-4949812,4949896-4950040,
           4950337-4950501,4950621-4950859,4950939-4950971,
           4951082-4951163,4951314-4951474,4951566-4951751,
           4951877-4952059,4952166-4952347,4952461-4952557
          Length = 945

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 77  VGTNLVTTTGQHISVRGEKKVELKLGSEVYQHNAIVADIVDDCIVGL 123
           +G N+   TG  +++  E    L +G+ +Y  +A++    D+ IV L
Sbjct: 495 LGVNVKMITGDQLAIGKETARRLGMGTNMYPSSALLGQDKDESIVAL 541


>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 161 KRSILTPRSETVVPVSLPQKSNSKPRCV 188
           K  + +P+SET++P S   +S S  RCV
Sbjct: 352 KCKVGSPQSETIIPPSQSPQSTSHARCV 379


>01_07_0137 - 41381294-41382433
          Length = 379

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 18  RYSERITGCWLAIEDGNSLAIKNEVNGTSCKLTLDTGASRTVTSFRIASRCFVDHTY 74
           RY ER  G WL +ED   +AI   + G S  ++   G    + +    +R FV   Y
Sbjct: 283 RYEEREEGRWLPVEDLGEVAILVGIGGRSLCVS-TRGGRDALRNHLYFARPFVSFEY 338


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,868,899
Number of Sequences: 37544
Number of extensions: 226735
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 14,793,348
effective HSP length: 78
effective length of query: 119
effective length of database: 11,864,916
effective search space: 1411925004
effective search space used: 1411925004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)