GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002061-TA|BGIBMGA002061-PA|IPR001969|Peptidase aspartic,
active site, IPR009007|Peptidase aspartic, catalytic,
IPR001995|Peptidase A2A, retrovirus, catalytic
         (197 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-5|CAB04550.2|  123|Caenorhabditis elegans Hypothetical pr...    38   0.006
U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical pr...    36   0.025
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    28   3.9  
AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z81560-5|CAB04550.2|  123|Caenorhabditis elegans Hypothetical
           protein K02E2.6 protein.
          Length = 123

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 42  VNGTSCKLTLDTGASRTVTSFRIASRCFVDHTYNQVGTNLVTTTGQHISVRGEKKVELKL 101
           VNG    + LDTGA  +       +   +D TY Q+  +     G  I   G  K+ L++
Sbjct: 33  VNGKVVHVLLDTGAGISYLPISKINLKDLDPTY-QLQAH--AANGTPILFHGIVKLALRM 89

Query: 102 GSEVYQHNAIVADIVD---DCIVGLDFMK 127
           G+ V++H   V+D  D   + ++G DFMK
Sbjct: 90  GNRVFEHTLHVSDDKDCPTEMLLGTDFMK 118


>U50068-3|AAD47115.1|  389|Caenorhabditis elegans Hypothetical
           protein C01G5.6 protein.
          Length = 389

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 23/108 (21%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 36  LAIKNEVNGTSCKLTLDTGASRTVTSFRIASRCFVDHTYNQVGTNLVTTTGQHISVRGEK 95
           L I   +NG   K  +D+GA +++ S   A RC ++   ++   ++    G    + G+ 
Sbjct: 245 LYINLTINGVPVKAFIDSGAQKSIMSMACAERCGLNGLIDRRFQSMARGVGGTEKIEGKI 304

Query: 96  KV-ELKLGSEVYQ-HNAIVADIVDDCIVGLDFMKTHSCEIDVRQGVLK 141
            + ++K+    +     ++A    D ++GL+ ++ H C I+++   L+
Sbjct: 305 HLCDVKVEDAHFSCPFEVMARREMDLLIGLNVLRKHGCCINLKTSRLE 352


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 43  NGTSCKLTLDTGASRTVTSFRIASRCFVDHTYNQVGTNLVTTTGQHISVRGEKKVELKLG 102
           NG      +DTGA  T+ S  +     +    +    N V   G  + + G   V  ++G
Sbjct: 504 NGMPQSALIDTGAHITLASRSVCKILGISQLKSSKRINTVGLGGNAVKLAGVASVTFRIG 563

Query: 103 SEVYQH 108
            ++ +H
Sbjct: 564 KKLIEH 569


>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 120 IVGLDFMKTHSCEIDVRQGVLKCSPEEISMEGASFGKVYCLKRSILTPRSET 171
           ++ LDF   +S + ++  G++ C   E+  +G  FG V C   ++   RS T
Sbjct: 37  LISLDFFSNNSKKPNMDPGLV-CRICELQADGTHFGVVTCRACAVFFRRSTT 87


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,978,999
Number of Sequences: 27539
Number of extensions: 195155
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 4
length of query: 197
length of database: 12,573,161
effective HSP length: 78
effective length of query: 119
effective length of database: 10,425,119
effective search space: 1240589161
effective search space used: 1240589161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)