Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002059-TA|BGIBMGA002059-PA|undefined
         (184 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          31   0.007
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    27   0.14 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.19 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.33 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.58 
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    25   0.58 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 59  ETMEADTTGITLET-TSNENSQNTDDQEQAGENDESGQNDEASQNADSPRNDEG 111
           ET + ++   T+    +N N+ N ++      N+ +G ND  + N  S  N+ G
Sbjct: 217 ETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNG 270



 Score = 27.5 bits (58), Expect = 0.083
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 32  PNNSDSDRVVVGVLTMPLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGEND 91
           P + +      G +   L+  Q +S   T+ A          +N N+ N ++   A +N 
Sbjct: 201 PEDEECTEATAGAVV--LETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNG 258

Query: 92  ESGQNDEASQNAD 104
                   + N D
Sbjct: 259 NGNGASNNNNNGD 271


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 31  PPNNSDSDRVVVGVLTMPLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGEN 90
           P    +S  ++   LT  L + Q    T  +E   +  +L+ T      NT+DQ+ + +N
Sbjct: 326 PLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSLDNT------NTNDQDYSSQN 379

Query: 91  DESGQNDEASQNADSPRNDEGPK 113
             +  +  ++ N  S + DE  K
Sbjct: 380 YLTVHSFPSTLNIPSVKIDEDQK 402


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 46  TMPLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDESGQNDE 98
           T P   S   + +    A TTG T   T     +  +D E A + D+  +N+E
Sbjct: 236 TGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQNDGEGADDRDDDEENEE 288



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 54  SSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDE 92
           +++ T T   +TT     TT        DD+E +G  +E
Sbjct: 669 TTTTTTTTTPNTTQNASATTPPPQVDEVDDKELSGAEEE 707


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 75  NENSQNTDDQEQAGENDESGQNDEASQNADSPRND 109
           N+N QN + Q     N  + QND  +   D+ RND
Sbjct: 501 NDNKQNGNRQNDNKRNG-NRQNDNQNNQNDNNRND 534



 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 63  ADTTGITLETTSNENSQNTDDQEQAGENDESGQNDEASQNADSPRND 109
           AD      +  +N+N+ N +  +Q G      + ++  QN +  +ND
Sbjct: 432 ADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNR-QND 477



 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 75  NENSQNTDDQEQAGENDESGQNDEASQNADSPRNDEGPK 113
           N+N QN + Q    +ND     +  + N  +     G K
Sbjct: 461 NDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNK 499



 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 75  NENSQNTDDQEQAGENDESGQNDEASQNAD 104
           N+N+ N +   Q  +N  +   +  +QNA+
Sbjct: 424 NQNAGNQNADNQNADNQNANNQNADNQNAN 453


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 51  KSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDESGQNDEASQNADSPRNDE 110
           +S S     T  ++     L  T     Q+ D      EN  +  + EAS NA+S  + E
Sbjct: 702 RSNSMGAVMTRNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIVHSEASANANSSTSSE 761


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
          protein.
          Length = 87

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 31 PPNNSDSDRVVVG 43
          PPNN DS  V+VG
Sbjct: 56 PPNNEDSSGVIVG 68


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 77  NSQNTDDQEQAGENDESGQNDEASQNADSPRND 109
           N+QN + Q    +ND + +N++  +NA++ +N+
Sbjct: 417 NNQNDNIQNTNNQNDNNQKNNK--KNANNQKNN 447



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 71  ETTSNENSQNTDDQEQAGENDESGQNDEASQN 102
           +   N N+QN ++Q+   +N  + +N+  + N
Sbjct: 421 DNIQNTNNQNDNNQKNNKKNANNQKNNNQNDN 452


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 67  GITLETTSNENSQNTDDQEQAGENDESGQNDEASQNADSPR 107
           GI       E + + DD E   EN +S +    S ++D  R
Sbjct: 74  GIQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSDDER 114


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 71  ETTSNENSQNTDDQEQAGENDES 93
           +T + +NS   D+QE + EN E+
Sbjct: 167 QTINRKNSDYLDNQEVSMENTEN 189


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 77  NSQNTDDQEQAGENDESGQNDEASQNADSPRNDE 110
           N+Q    Q+Q  +  +  Q  +  Q    P  +E
Sbjct: 436 NAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEE 469


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.297    0.117    0.321 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,325
Number of Sequences: 429
Number of extensions: 1370
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 184
length of database: 140,377
effective HSP length: 54
effective length of query: 130
effective length of database: 117,211
effective search space: 15237430
effective search space used: 15237430
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.7 bits)
S2: 41 (20.6 bits)