GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002059-TA|BGIBMGA002059-PA|undefined
         (184 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    31   0.006
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    27   0.092
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   2.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.0  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 31.1 bits (67), Expect = 0.006
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 50  KKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDESGQNDEA 99
           K+    +  +T + D    +LE + NENS+N DD E  G   ++  ++EA
Sbjct: 81  KRPNGDTNGDTSQVDDQNESLEASVNENSKNGDDDE--GHEWQADVSEEA 128



 Score = 26.2 bits (55), Expect = 0.16
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 49  LKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDESGQNDEASQ 101
           L + + S +++    DT G     TS  + QN   +    EN ++G +DE  +
Sbjct: 71  LTEGKRSKRSKRPNGDTNG----DTSQVDDQNESLEASVNENSKNGDDDEGHE 119


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
          protein.
          Length = 980

 Score = 27.1 bits (57), Expect = 0.092
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 35 SDSDRVVVGVLTMPLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQA-GENDES 93
          S S+RV    L  PLK +QS S T+  +  ++       S    + TD+   A  + D+ 
Sbjct: 26 SSSERVTRRRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRSRPGHRKTDNSLSATSKKDKD 85

Query: 94 G 94
          G
Sbjct: 86 G 86


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 47  MPLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGEND 91
           +P  + Q +  TE+     +    E+++ +  Q T   E   E+D
Sbjct: 396 VPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESD 440


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/66 (18%), Positives = 25/66 (37%)

Query: 48  PLKKSQSSSKTETMEADTTGITLETTSNENSQNTDDQEQAGENDESGQNDEASQNADSPR 107
           P K+ +S +  +  EAD   +  +    E         +     E    DE S +++  +
Sbjct: 845 PDKREKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDERSFHSNGAK 904

Query: 108 NDEGPK 113
            ++  K
Sbjct: 905 EEDEDK 910


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 41  VVGVLTMPLKKSQSSSKTETMEADTTGITLETTSNENS 78
           VV  +T  L ++  SS ++T    T+G+     +NE S
Sbjct: 396 VVTKVTCELFQATLSSSSDTNRFGTSGLAWLYLNNEGS 433


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.297    0.117    0.321 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,864
Number of Sequences: 317
Number of extensions: 1147
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 184
length of database: 114,650
effective HSP length: 53
effective length of query: 131
effective length of database: 97,849
effective search space: 12818219
effective search space used: 12818219
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.7 bits)
S2: 41 (20.6 bits)