GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002058-TA|BGIBMGA002058-PA|undefined
         (279 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    27   0.16 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.5  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   3.3  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   3.3  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 86  ETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWE 121
           +T  + S V  +++S+E     +  N DDD G  W+
Sbjct: 86  DTNGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQ 121


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 155  FRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIAT--RDVGVGPESD 204
            + +  + E  D E V +G    + ++E    GT  +V A     +G G  SD
Sbjct: 1429 YTIHYKPEFGDWETVQIGPTVEKYTLEKLLCGTRYQVYAKAYNSIGTGDPSD 1480


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 97  EDDSIEEYEVNSDWNCDDDNGDL 119
           +DD+I + E + D + D D GDL
Sbjct: 229 DDDNISDPEDDDDKDQDMDEGDL 251


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 215 ITTQTMKLLLREMDPITENYTAEREKLKKKDIA 247
           IT +++  LL  ++ IT N  +E E+ K+K +A
Sbjct: 246 ITGKSIVQLLTCLNFITNNLKSENEEFKEKLLA 278


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 215 ITTQTMKLLLREMDPITENYTAEREKLKKKDIA 247
           IT +++  LL  ++ IT N  +E E+ K+K +A
Sbjct: 246 ITGKSIVQLLTCLNFITNNLKSENEEFKEKLLA 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.126    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,595
Number of Sequences: 317
Number of extensions: 1800
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 114,650
effective HSP length: 56
effective length of query: 223
effective length of database: 96,898
effective search space: 21608254
effective search space used: 21608254
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)