Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002058-TA|BGIBMGA002058-PA|undefined
(279 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 36 0.023
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 35 0.070
At1g69610.1 68414.m08006 expressed protein 34 0.12
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 32 0.37
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 32 0.49
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 32 0.49
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 31 0.65
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 31 0.65
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 31 0.65
At2g22795.1 68415.m02704 expressed protein 31 0.65
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 31 0.86
At5g22310.1 68418.m02603 expressed protein 31 0.86
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot... 31 0.86
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,... 31 0.86
At4g03565.1 68417.m00490 expressed protein 31 1.1
At3g50690.1 68416.m05546 leucine-rich repeat family protein 31 1.1
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 31 1.1
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 31 1.1
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 31 1.1
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 30 1.5
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 30 1.5
At1g67140.1 68414.m07638 expressed protein 30 1.5
At5g63740.1 68418.m08000 zinc finger protein-related 30 2.0
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 30 2.0
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC... 29 2.6
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC... 29 2.6
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 29 2.6
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 2.6
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 2.6
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 29 2.6
At1g71470.1 68414.m08259 hypothetical protein 29 2.6
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 29 3.5
At3g21480.1 68416.m02710 transcription activation domain-interac... 29 3.5
At2g34100.1 68415.m04175 expressed protein similar to the Asp-r... 29 3.5
At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam ... 29 3.5
At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam ... 29 3.5
At1g26890.1 68414.m03279 hypothetical protein 29 3.5
At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase fa... 29 3.5
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 29 4.6
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 29 4.6
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 29 4.6
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 29 4.6
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 29 4.6
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 29 4.6
At3g57180.1 68416.m06366 expressed protein 29 4.6
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 29 4.6
At3g03130.1 68416.m00309 expressed protein ; expression supporte... 29 4.6
At2g42975.1 68415.m05331 expressed protein 29 4.6
At2g12875.1 68415.m01402 hypothetical protein 29 4.6
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ... 28 6.0
At5g64870.1 68418.m08160 expressed protein 28 8.0
At5g64540.1 68418.m08111 hypothetical protein 28 8.0
At5g63530.1 68418.m07974 copper chaperone (CCH)-related low simi... 28 8.0
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 28 8.0
At5g19650.1 68418.m02338 ovate protein, putative 84% similar to ... 28 8.0
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 8.0
At1g35660.1 68414.m04432 expressed protein 28 8.0
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 28 8.0
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 36.3 bits (80), Expect = 0.023
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 73 KNEPSGSTSSQSVETTD-EVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFF 131
KNE + + + E TD E S + + E E ++ DD NGD +N D
Sbjct: 82 KNEETEVVTETNEEKTDPEKSGEENSGEKTESAEERKEF--DDKNGDGDRKNG---DGEK 136
Query: 132 SDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEV 191
SD + +K Q E ++EE + +E+ E+ G E+ E E+ A TEE
Sbjct: 137 DTESESDETKQKEKTQLEESSEENK--SEDSNGTEENAGESEENTEKKSEENAGETEEST 194
Query: 192 IATRDV 197
++DV
Sbjct: 195 EKSKDV 200
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 76 PSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQN 123
P G++SS +++ DE S +DD ++++ + D + DD+N +LW+ N
Sbjct: 170 PLGNSSSSTLDHDDEFISSDYDDD--DDFDDDDD-DDDDENSELWDSN 214
>At1g69610.1 68414.m08006 expressed protein
Length = 636
Score = 33.9 bits (74), Expect = 0.12
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 113 DDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVG 172
DDD+G + Q F + + F H+ +EE+ + D +EE+ D D G
Sbjct: 202 DDDDGFIELNPSLQISNFAYGEE-EEEEFIHR--EEEM---KMGFDEQEEVYDEFDDGSD 255
Query: 173 TEDNEVSMEDAAVGTEEEVIATRDVG---VGPESDEPIR--IPRRYTITTQTMKLLLREM 227
++D+E D + E+ R G + ES+ P++ P + K + E+
Sbjct: 256 SDDDEFEHSDVIEKLKTELRTARTGGLCTILEESETPLQELKPLKIEPKPDQHKDRIAEI 315
Query: 228 DPITENYTAEREKLKKKDIAQRHEEVALTLQ 258
+ +NY + KL D H L L+
Sbjct: 316 HKVYKNYAVKMRKLDVIDSQTMHSISLLKLK 346
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 32.3 bits (70), Expect = 0.37
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 75 EPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDR 134
E + + V +E +S+++E D E DDN + QN D S R
Sbjct: 90 EQRTTVKKKIVVDLEEENSIESESDITIEESALCLLQMKDDNMSEYLQNLKSIDSLVSTR 149
Query: 135 KFSD---YSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDA 183
K D Y E + +E+ V+ E+E + +DV T D E + D+
Sbjct: 150 KRKDTENYIEIDSDENHEDSDDEYVVEDEDEDNEDDDVKSLTSDVENLIGDS 201
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 131 FSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGV-----GTEDNEVSMEDAAV 185
FS D + E+ + EE+ + EEE D +D GV G ED+E S E + +
Sbjct: 73 FSSIDEPDLEEDEESEDEDFSAEEYEYEDEEE-EDEQDSGVVVSERGIEDSEASEEVSEI 131
Query: 186 GTEEE 190
G +EE
Sbjct: 132 GDKEE 136
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 131 FSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGV-----GTEDNEVSMEDAAV 185
FS D + E+ + EE+ + EEE D +D GV G ED+E S E + +
Sbjct: 73 FSSIDEPDLEEDEESEDEDFSAEEYEYEDEEE-EDEQDSGVVVSERGIEDSEASEEVSEI 131
Query: 186 GTEEE 190
G +EE
Sbjct: 132 GDKEE 136
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVG-VGPESDEP 206
EEV EE + EEE+ D +D ED+ ED G E AT G + DEP
Sbjct: 44 EEVEYEEVEEEQEEEVEDDDD-----EDDGDENEDQTDGNRIEAAATSGSGNQEDDDDEP 98
Query: 207 IR 208
I+
Sbjct: 99 IQ 100
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVG-VGPESDEP 206
EEV EE + EEE+ D +D ED+ ED G E AT G + DEP
Sbjct: 44 EEVEYEEVEEEQEEEVEDDDD-----EDDGDENEDQTDGNRIEAAATSGSGNQEDDDDEP 98
Query: 207 IR 208
I+
Sbjct: 99 IQ 100
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVG-VGPESDEP 206
EEV EE + EEE+ D +D ED+ ED G E AT G + DEP
Sbjct: 44 EEVEYEEVEEEQEEEVEDDDD-----EDDGDENEDQTDGNRIEAAATSGSGNQEDDDDEP 98
Query: 207 IR 208
I+
Sbjct: 99 IQ 100
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 31.5 bits (68), Expect = 0.65
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 73 KNEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFS 132
+NE SG+ S+ E D + + E EE EV DNG E+N+ +
Sbjct: 154 ENEKSGTEESEVEERKDNGGTEENEKSGTEESEVEE----RKDNGGT-EENEKSGTEESE 208
Query: 133 DRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTED--VGVGTEDNEVSMEDAAVGTEEE 190
+ + T + E+ +EE V+ +++ TE+ GTE++EV + +EE
Sbjct: 209 VEERKENGGTEE--NEKSGSEESEVEEKKDNGGTEESREKSGTEESEVEEKKDNGSSEES 266
Query: 191 VIATRDVGVGPESDE 205
+ + G + E
Sbjct: 267 EVEEKKENRGIDESE 281
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 89 DEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQE 148
D + V D++ +E N + + NGD ++N+ + K S+ +++
Sbjct: 68 DLIPRVVEVDEAEDEGSKNVVESFNSGNGDD-KENEIVEGGEENKEKESEGIVSNEDSNS 126
Query: 149 EVATEEFRVDAEE-EIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESDE 205
E+ ++ EE E+ + D G GTE+NE S GTEE + R G E +E
Sbjct: 127 EIEEKKDSGGVEESEVEEKRDNGGGTEENEKS------GTEESEVEERKDNGGTEENE 178
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 31.1 bits (67), Expect = 0.86
Identities = 38/189 (20%), Positives = 88/189 (46%), Gaps = 10/189 (5%)
Query: 81 SSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWE-QNQWQFDQ---FFSDRKF 136
SS+ + T+ +++++ E DS++ + ++ + + + E NQ Q + +
Sbjct: 976 SSEIMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSNQITDVQKALVEQEAAY 1035
Query: 137 SDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDN--EVSMEDAAVGTEEEVIAT 194
+ HK++ E +E + VD ++ E+ EV+ D+ +G EE + +
Sbjct: 1036 NTLEEEHKQINE--LFKETEATLNKVTVDYKEAQRLLEERGKEVTSRDSTIGVHEETMES 1093
Query: 195 RDVGVGPESDEPIRIPRRYTITTQTMKLLLREMDPITENYTAEREKLKKKDIAQRHEEVA 254
+ + DE + + + ++L +++ +TE E+E+ +K+ A+ EE A
Sbjct: 1094 LRNELEMKGDEIETLMEKISNIEVKLRLSNQKLR-VTEQVLTEKEEAFRKEEAKHLEEQA 1152
Query: 255 LTLQKRFSI 263
L L+K ++
Sbjct: 1153 L-LEKNLTM 1160
>At5g22310.1 68418.m02603 expressed protein
Length = 481
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 134 RKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSME 181
R+ ++ T +K++EE+ E+ D EE+ D G+G + E+ E
Sbjct: 272 RELTEAKETERKMKEEMKREKRAKDVLEEVCDELTKGIGDDKKEMEKE 319
>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
similar to SP|O35134 DNA-directed RNA polymerase I
largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
subunit) (RPA194) {Mus musculus}; contains InterPro
accession IPR000722: RNA polymerase, alpha subunit
Length = 1670
Score = 31.1 bits (67), Expect = 0.86
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 74 NEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSD 133
N+ +G + + D VS Q EDD ++ E DD D +Q + + D+
Sbjct: 1315 NDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTE---VDDLGSDAQKQKKQETDEM--- 1368
Query: 134 RKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIA 193
DY EE + +E + V+ ++ ED EVS ED EE +
Sbjct: 1369 ----DY--------EENSEDETNEPSSISGVEDPEMDSENEDTEVSKEDTPEPQEESMEP 1416
Query: 194 TRDV 197
++V
Sbjct: 1417 QKEV 1420
>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 793
Score = 31.1 bits (67), Expect = 0.86
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 73 KNEPSGSTSSQSVET-TDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFF 131
KN+ G +++ T E + D++ EE N D DDNG + ++ + +
Sbjct: 370 KNQKQGRLKKKTLPRGTSEYQAAWIVDETDEEDSDNGD---SDDNGMVLDRGEDSNQEGM 426
Query: 132 SDRKFSDYSFTHKKLQ-EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEE 190
D++F D K L ++ TE E E+VD ED+ +E+ A +EE
Sbjct: 427 YDQEFED---DGKSLNLRDIDTE---TQNESEMVDDEDLTEEQIKDEIKKIKEAYADDEE 480
>At4g03565.1 68417.m00490 expressed protein
Length = 263
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 74 NEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSD 133
+E G ++ + + D+ S + E D+ E E N D + DD +Q +W+ D F D
Sbjct: 52 DEYDGESNEEEDDDDDDNESDREEGDTEREGEDNGD-SIVDDGYSTNDQPEWEVDNF--D 108
Query: 134 RKFSDY 139
+SD+
Sbjct: 109 DLYSDF 114
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 94 VQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATE 153
V ++D + E + NG + N ++ + + D + +EEV +
Sbjct: 215 VDVDEDEESDAEDDESEQATGVNGTSYRANGFRLEAVNGEEVREDDGDDSESGEEEVGED 274
Query: 154 EFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVG 200
V+ E I D+E+ G +D E ED EEE + D G+G
Sbjct: 275 NDVVEVHE-IEDSENEEDGVDDEEDDEED----EEEEEVDNADRGLG 316
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 137 SDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRD 196
SD +F+ ++ +E V E + +EE ++ G++D+EV+ D + ++ E D
Sbjct: 7 SDEAFSSEEEEERVKDNE---EEDEEELEAVARSSGSDDDEVAAADESPVSDGEAAPVED 63
Query: 197 VGVGPESDEPIRIPRRYTITTQTMKLLLRE 226
E +E I +R + M+ L ++
Sbjct: 64 DYEDEEDEEKAEISKREKARLKEMQKLKKQ 93
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 99 DSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVD 158
D + E E D +CDD ++ D +F+ FS+ + KL+E + EE D
Sbjct: 346 DVVGEAEFQFDLDCDDLES-VYSSKIQLTDDYFTKNPFSNGRSSLGKLEESIKEEE--ED 402
Query: 159 AEEEIVDTED 168
EEE TE+
Sbjct: 403 EEEEEDKTEN 412
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 99 DSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVD 158
D + E E D +CDD ++ D +F+ FS+ + KL+E + EE D
Sbjct: 466 DVVGEAEFQFDLDCDDLES-VYSSKIQLTDDYFTKNPFSNGRSSLGKLEESIKEEE--ED 522
Query: 159 AEEEIVDTED 168
EEE TE+
Sbjct: 523 EEEEEDKTEN 532
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 97 EDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEE 154
+DD EE+E+N DW ++ ++ QW+ D + D D+S KK E + ++
Sbjct: 19 DDDEFEEFEINEDWLEKEEVKEV--SLQWE-DDWDDDDVSDDFSRQLKKELENASEKK 73
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 143 HKKLQEEV-ATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGP 201
H++ +EE+ A + F +D+ ++I + D E + E +V+ + + P
Sbjct: 494 HEQNREEMDAHDRFFMDSIKQIHERRDA------KEENFEMLQQQERAKVVGQQQQNINP 547
Query: 202 ESDEPIRIPRRYTITTQTMKLLLREMDPITEN---YTAEREKLKKKDIAQRHEEVALTLQ 258
S++ R +R + ++ +EM+ E ++EK K +D+ +RH E L+
Sbjct: 548 SSNDDCR--KRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEK-KMEDMKKRHHEEIFDLE 604
Query: 259 KRFSIFLSAL 268
K F L L
Sbjct: 605 KEFDEALEQL 614
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 5/131 (3%)
Query: 76 PSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRK 135
P TS+ ++ + +S++ T + + E +D +++ D + + W D F S
Sbjct: 1915 PEKVTSTANMVKEEALSTMPTSFNQVSTVESGTDEEEEEEEDD--DDDDW--DTFQSFPA 1970
Query: 136 FSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATR 195
++ + K E VA EE + I D E T+D ++ + A T E+
Sbjct: 1971 STNLEGSESKT-ESVAEEEPDLPGRSSIQDDESNAEETDDQHLASDHATDITREDSNDKS 2029
Query: 196 DVGVGPESDEP 206
V E+ EP
Sbjct: 2030 KEVVEEETVEP 2040
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/114 (20%), Positives = 42/114 (36%)
Query: 86 ETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKK 145
E DE +DD ++ + D DDD D +++ D +D + D +H+
Sbjct: 85 EDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDEDEDDDDDDDDENDEECDDEYDSHRL 144
Query: 146 LQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGV 199
+ T +F E ++T + +S D G + +GV
Sbjct: 145 ISTPYCTHKFCKTCWREYLETNFYSLEENLTVISCPDQDCGASVRLKTIEKLGV 198
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Query: 85 VETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHK 144
VET DE T D E + N + + DD +L E+ Q + + D
Sbjct: 4624 VETADEPEESNTSDKPEEGNDENVEQDDFDDTDNLEEKIQTKEEALGGLTPDVDNEQIDD 4683
Query: 145 KLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVG-PES 203
++ + E + DA ++ + E+ E E+ +EE + A + G P+
Sbjct: 4684 DMEMDKTEEVEKEDANQQEEPCSEDQKHPEEGENDQEETQEPSEENMEAEAEDRCGSPQK 4743
Query: 204 DEP 206
+EP
Sbjct: 4744 EEP 4746
>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 362
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESD 204
E V EE + +EE+ TE G +NE S D V EEV + + ESD
Sbjct: 150 ENVVAEEIKSQGQEEV--TELGRSGCVENEESGGDVLVAESEEVRVEKSSNMVEESD 204
>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 364
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESD 204
E V EE + +EE+ TE G +NE S D V EEV + + ESD
Sbjct: 150 ENVVAEEIKSQGQEEV--TELGRSGCVENEESGGDVLVAESEEVRVEKSSNMVEESD 204
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 95 QTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSD---RKFSDYSFTHKKLQEEV- 150
++ DD EE D + DDD D+ + + W+ ++ F+D +D L E+
Sbjct: 259 KSNDDDDEEGPRGGDLDMDDD--DIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIP 316
Query: 151 ATEEFRVDAEEEIVDTEDVGVGTEDNEV 178
A E + D ++E + E+ G+ E+
Sbjct: 317 APPEIKQDEDDEENEEEEGGLSKSGKEL 344
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 95 QTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFD-QFFSDRKFSDYSFTHKKLQEEVATE 153
+ E++ +EEYE + DDD+ D+ QN + + + + D K D + +QEE+A +
Sbjct: 24 EVEEEQVEEYEEEEEE--DDDDDDVGNQNAEEREVEDYGDTKGGDM----EDVQEEIAED 77
Query: 154 E 154
+
Sbjct: 78 D 78
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 146 LQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDV 197
L+EEV EE + EEI E++ E E E+ AV TEEE R V
Sbjct: 33 LEEEVEYEEVEEEEIEEI--EEEIEEEVEVEEEEEEEDAVATEEEEEKKRHV 82
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 134 RKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIA 193
++ D K +QE A ++ V + I + E V +ED +VS + A+ TE A
Sbjct: 166 KEIPDDFVQEKYVQENHAVKQTEV-LSKSINEPEKVFTPSEDEQVSAAEEALVTETVNEA 224
Query: 194 TRDVGVGPESDEPI-RIPRRYTITTQTMKLLLREMDPITENYTAEREKLKKKDIAQRHEE 252
+V ESD IP+R +K++ P++ + T + + KK++ H
Sbjct: 225 PIEVQKVGESDSRTGEIPKR--SYASIVKVMKENAAPMSASRTPTKVEPKKQEDQAIHIP 282
Query: 253 VALTLQKR 260
+ L ++
Sbjct: 283 LPTPLSEK 290
>At1g71470.1 68414.m08259 hypothetical protein
Length = 131
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 74 NEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSD 133
N P SS+ + +VS+ +DDS+E+ +S +++NG + E F
Sbjct: 7 NSPPKPESSEEELSDSQVSNSSEDDDSMEDEPSDS----ENNNGVVTETEANGIKDEFWA 62
Query: 134 RKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTE 167
R S F K++ +E +EE+ ++ + I D +
Sbjct: 63 RYPSLKMFLSKEMVKEFISEEYILEKGKLIGDNK 96
>At5g27650.1 68418.m03313 PWWP domain-containing protein
hypothetical protein F22F7.12 - Arabidopsis thaliana,
EMBL:AC009606
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 85 VETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHK 144
+ +E + + + DSI++ +V D D +GD+ E + S + +
Sbjct: 7 IPVMNEDAVIVQQTDSIQDPKVTPDDTVVDSSGDVHEAIDDDVEASSPMELDSAVTNDAR 66
Query: 145 KLQEEVATEEFRVDAEEE-IVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPES 203
L+ E + ++ V +EEE + +EDV + +D +++ EE+ + +G E+
Sbjct: 67 VLESERSEKDGVVGSEEEDEIKSEDVLIDKDDESSEVKEEE--EEEDGSDDQSSELGSEA 124
Query: 204 DE 205
DE
Sbjct: 125 DE 126
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 75 EPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNG 117
E S ++Q ++ D+ V ++DD + E NSD + DD+G
Sbjct: 96 EASDGLATQVLDLCDDEVVVDSDDDVTDVLEGNSDLSDSDDSG 138
>At2g34100.1 68415.m04175 expressed protein similar to the Asp-rich
region of GP|1633572|U52064
Length = 345
Score = 29.1 bits (62), Expect = 3.5
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 73 KNEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFS 132
K +PS + ++ + + + Q DD E Y +D DDD + ++ +++ +
Sbjct: 104 KEKPSQHWAMRASKFPESFTQAQGGDDCYENYGDGADGIDDDDYDEENSESSLKWNCDYQ 163
Query: 133 DRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVI 192
K SF + +EE +E VD E D++D D+E D V E +
Sbjct: 164 LLKSGYLSFDEE--EEEDNDDEEDVDIFSE--DSDDSWNEDFDDEDEEADTTVFKYSENM 219
Query: 193 ATRDVG 198
+ D+G
Sbjct: 220 SELDLG 225
>At1g64750.2 68414.m07342 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 97 EDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYS 140
+DD EE+E+N DW ++ ++ QW+ D + D D+S
Sbjct: 20 DDDEFEEFEINEDWLEKEEVKEV--SQQWE-DDWDDDDVNDDFS 60
>At1g64750.1 68414.m07341 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 74
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 97 EDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYS 140
+DD EE+E+N DW ++ ++ QW+ D + D D+S
Sbjct: 20 DDDEFEEFEINEDWLEKEEVKEV--SQQWE-DDWDDDDVNDDFS 60
>At1g26890.1 68414.m03279 hypothetical protein
Length = 280
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 121 EQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSM 180
+ N +F S K Y+ T +K + V EE V+ E E+ D +DV +D E +
Sbjct: 144 DDNLTKFTVKVSTLKQLHYNTTRRK--DGVEDEEDVVE-ENEVEDDDDVDEVEDDEEGVV 200
Query: 181 EDAAVGTEEE 190
E+ VG EE
Sbjct: 201 EEVDVGEVEE 210
>At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 622
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 82 SQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSF 141
++ + T +V S +++ + E++ + D+N D ++ + D+FF+ FS+
Sbjct: 447 AKRLTTEQDVLSPKSDGEGETEFQFDIDYN----ELDSVYGSETETDEFFAKNPFSNGRS 502
Query: 142 THKKLQEEVATEEFRVDAEEE 162
+ +L+E +A EE D EEE
Sbjct: 503 SLGELKESIAEEE--EDDEEE 521
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATR 195
E + EEF +D ++E ED ED + E+ EEEV T+
Sbjct: 297 EAIEGEEFEIDNDDEDDIDEDEDEDEEDEDEDEEEDDEDEEEEVSKTK 344
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 109 DWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTED 168
D + + + D++ ++ ++ +S H + + E + +DAE TE+
Sbjct: 146 DGSQETERMDMYSMERFDMEEDLLFTFHETFSTNHNENKHESFAHDMELDAENVRDTTEE 205
Query: 169 VGVGT------EDNEVSMEDAAVGTEEEVIATRDVGVGPESDEPIRIPRRYTITTQTMKL 222
V + NE S + E + D+ + P+ E IRI + +T+
Sbjct: 206 ASVRVVEAEPLDSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQEEDTVRETICT 265
Query: 223 LLREM 227
+++ +
Sbjct: 266 IVQRL 270
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 109 DWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTED 168
D + + + D++ ++ ++ +S H + + E + +DAE TE+
Sbjct: 146 DGSQETERMDMYSMERFDMEEDLLFTFHETFSTNHNENKHESFAHDMELDAENVRDTTEE 205
Query: 169 VGVGT------EDNEVSMEDAAVGTEEEVIATRDVGVGPESDEPIRIPRRYTITTQTMKL 222
V + NE S + E + D+ + P+ E IRI + +T+
Sbjct: 206 ASVRVVEAEPLDSNEPSRDHQNASRHREDPESDDILLEPQMSEDIRIAQEEDTVRETICT 265
Query: 223 LLREM 227
+++ +
Sbjct: 266 IVQRL 270
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 147 QEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESDEP 206
+ EV+++E EEE V+ + V +D+E+ + G++EE +A + V + P
Sbjct: 6 KREVSSDEAYSSEEEEQVN-DQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVP 64
Query: 207 I 207
+
Sbjct: 65 V 65
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 147 QEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESDEP 206
+ EV+++E EEE V+ + V +D+E+ + G++EE +A + V + P
Sbjct: 6 KREVSSDEAYSSEEEEQVN-DQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVP 64
Query: 207 I 207
+
Sbjct: 65 V 65
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 148 EEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESDEPI 207
EE EE + EEE E+ E+ E E+ G E +TR +G P P+
Sbjct: 88 EEEEKEEEEKEEEEEEEGEEEEEEEEEEEEKEEEENVGGEESSDDSTRSLGKRP---PPM 144
Query: 208 RI-PRRYTITTQTMKL------LLREMDPITE 232
RI RR+ + + +L LL+E+D TE
Sbjct: 145 RIWMRRHQLQWKFRRLCNMNECLLQEIDEETE 176
>At3g57180.1 68416.m06366 expressed protein
Length = 644
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 89 DEVSSVQTEDDSIEEYEVNSDWNCDDD--------NGDLWEQNQWQFDQFFSDRKFSDYS 140
DE++ + DD +E E D DD+ N + +W+ D++ ++ +D
Sbjct: 135 DELAGFEMVDDDADEEEEGEDDEMDDEIKNAIEGSNSESESGFEWESDEWEEKKEVNDVE 194
Query: 141 FTHKKLQEEVATEEFRVDAEEEIVDTED 168
KK + TE ++ EE D D
Sbjct: 195 LDEKK-KRVSKTERKKIAREEAKKDNYD 221
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 81 SSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYS 140
S QS TD+ + DD E E SD N D+ ++ E+ + +
Sbjct: 406 SIQSSTGTDDAYGSKEIDDRENELEEGSDANGGDNEREVREKETEIDKEVAQGDNEREVG 465
Query: 141 FTHKKLQEEVATEEFRV-DAEEEIVDTEDVGVGTEDNEVSMEDAAV--GTEEEVIATRDV 197
++ +EV + + D +++ ++V T S +D V +++ +A ++
Sbjct: 466 EKETEIDKEVGQGDSDIFDGNKDMELNKEVAESTIGVAESEKDKEVTESEKDKEVAESEI 525
Query: 198 GVGPESDEPIRI 209
GV PES++ I +
Sbjct: 526 GV-PESEKDIEV 536
>At3g03130.1 68416.m00309 expressed protein ; expression supported
by MPSS
Length = 520
Score = 28.7 bits (61), Expect = 4.6
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 79 STSSQSVETTDEVSSVQTEDDSIE-EYEVNSDWNCDDDNGDLWEQNQWQFDQFFS--DRK 135
+T + + E+ E + +E +S E EYE + W DD G NQ F+ S D
Sbjct: 302 NTLACNKESEPEQMKIDSESESEETEYETDP-WE-GDDFGVAVHTNQEAFESKVSASDNV 359
Query: 136 FSDYSFTHKKLQEEVATEEFRVD--AEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEV 191
S + +E +F A EE+ + D E EV +E+ + G+EE +
Sbjct: 360 SKVDSVATVLIADESKELDFSSSPLAVEELEEDSDEWSDYEIGEVELEENSCGSEESI 417
>At2g42975.1 68415.m05331 expressed protein
Length = 187
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 74 NEPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSD 133
N + TSS S + SSV+T+ D +E+ SD D G + Q D
Sbjct: 53 NNNNNDTSSSSFSGSSSSSSVRTQLDLLEQLTSTSDGYLSDGGGSRGLTIRDQLAGLVGD 112
Query: 134 RKFSDYSFTHKKLQEEVATEEFRVDAEEEI 163
R D+S K ++V+ + + + I
Sbjct: 113 RD-DDFSIPLGKNLKKVSPKFLTISQKRNI 141
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 143 HKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPE 202
+ K +EE + ++ + +EEE + E+ G +D E S D+ T EE +T + P
Sbjct: 115 YDKNEEEKSEKDEQEKSEEEESEEEEKEEGNDDGEESSNDST--TTEEPSSTEE----PS 168
Query: 203 SDEPIRIPRRYTITTQTMKLLLREMDPITE--NYTAEREKLKKKDIAQRHEE 252
S E + T + + L ++ + E +Y E EK +K + + EE
Sbjct: 169 SSEQNKAIEGGG-TEEPILALTPVLEAVEEEKSYKNEEEKSEKDEEEKSEEE 219
>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
Pfam profile PF03108: MuDR family transposase
Length = 462
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 158 DAEEEIVDTEDVGVGTEDNEV---SMEDAAVGTEEEVIATRDVGVGPESDEPIRIPRR 212
+ E EIVD EDV V E+ +V + + E+E T D G E + R+ RR
Sbjct: 280 ELEAEIVDEEDVNVKAEEIQVFDIRNYEEQIPYEDEEYPTTDDESGDEEVQAERLVRR 337
>At5g64870.1 68418.m08160 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 156 RVDAEEEIVDTEDVGVGT-EDNEVSMEDAAVGTEEEVIATR 195
++DAE +I+ T+ +G GT E+ +V E E+E + +
Sbjct: 205 KIDAESKIISTQRLGEGTKEEIKVKTEVKVFQNEKEALVAK 245
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 75 EPSGSTSSQSVETTDEVSSVQTEDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDR 134
+P ++ S ET + + + N DW+ DD + Q+Q F + +R
Sbjct: 356 KPDLASPSAGRETETQKPGLALPSAGLRTMTRNKDWSPSDDGLPTFTQDQLVFMK-SHNR 414
Query: 135 KFSDYSFTHKKLQEEVATEEFRVDAEEE 162
F DY F K ++ ++ FR E +
Sbjct: 415 LFPDYVFGRYKYKKRMSA--FRHQEEHQ 440
>At5g63530.1 68418.m07974 copper chaperone (CCH)-related low
similarity to copper homeostasis factor [GI:3168840];
nearly identical to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 355
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 144 KKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEE 189
KK +E+ E+ +VDAE++ D++ E N+ S ED+A E
Sbjct: 19 KKPEEKKEGEDKKVDAEKKGEDSDKKPQEGESNKDSKEDSAPAAPE 64
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 97 EDDSIEEYEVNSDWNCDDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKLQEEVATEEFR 156
E++ +E+YEV D + DD+ D +++ + D S + ++ +++
Sbjct: 59 EEEPLEDYEVTDDSDEDDEVSDGSDED--DISPAVESEEI-DESDDGENGSNQLFSDDEE 115
Query: 157 VDAEEEIVDTEDVGVGTEDNEVSM--EDAAVGTEEEVIATRD 196
+ EE + D G G ED E S+ + A +++++A D
Sbjct: 116 ENDEETLGDDFLEGSGDEDEEGSLDADSDADSDDDDIVAKSD 157
>At5g19650.1 68418.m02338 ovate protein, putative 84% similar to
ovate protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 221
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 110 WNC--DDDNGDLWEQNQWQFDQFFSDRKFSDYSFTHKKL----QEEVATEEFRVDAEEEI 163
W+C ++D GD E D FS R FS S + + + E+FR E I
Sbjct: 118 WSCSEEEDEGDKEESEDDDSDTLFSSRSFSSDSSKAESFAVVKKSKDPYEDFRTSMVEMI 177
Query: 164 VDTE 167
V+ +
Sbjct: 178 VERQ 181
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 158 DAEEEIVDTEDVGVGTEDNEVSMEDAAVGTEEEVIATRDVGVGPESD 204
D E+ + TE ED++ + ED ++ E+ ++ RDVG +SD
Sbjct: 19 DREDPVAITEVDNGEEEDDDEANEDLSLKILEKALSRRDVGNKLDSD 65
>At1g35660.1 68414.m04432 expressed protein
Length = 1155
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 111 NCDDDNGDLWEQNQWQFDQF----FSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDT 166
NC +D G W + +QF + + SD +F +Q EV D EEE +D
Sbjct: 363 NCKEDPGAYWVVRAYAHEQFARLILNSDEESDLTFESNGVQREVKI----TDLEEEALD- 417
Query: 167 EDVGVGTEDNE 177
V + +NE
Sbjct: 418 -PVTIADHENE 427
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 130 FFSDRKFSDYSFTHKKLQEEVATEEFRVDAEEEIVDTEDVGVGTEDNEVSMED 182
F S + + +HKK++ A+++ + EEE + +D ED E ED
Sbjct: 159 FTSHQALGGHRASHKKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEED 211
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.307 0.126 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,539,751
Number of Sequences: 28952
Number of extensions: 230132
Number of successful extensions: 1097
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 78
length of query: 279
length of database: 12,070,560
effective HSP length: 80
effective length of query: 199
effective length of database: 9,754,400
effective search space: 1941125600
effective search space used: 1941125600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -