GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002057-TA|BGIBMGA002057-PA|undefined
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo...    25   2.0  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    24   6.2  

>SPBC1683.10c |pcl1||ferrous iron transporter
          Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 13 ISAARPSIA-LVRRLSWANSRIIGLNFSLLSL-GVRVHVI 50
          I  ARP  A  V ++ W  + ++G N  +LSL G+ V V+
Sbjct: 4  IFEARPKEAHSVNKIGWLRASVLGANDGILSLSGLLVGVV 43


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 1   MILSTGRDLSILISAARPSIALVRRLSWANSRIIGLNFS 39
           M L+TG     L    R S  L+ +L + N  ++ +NFS
Sbjct: 90  MTLATGISRLNLSGCTRISEPLIGKLLYQNLNLVTINFS 128


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,116
Number of Sequences: 5004
Number of extensions: 7336
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)